miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 3' -52.7 NC_005264.1 + 106551 1.11 0.004064
Target:  5'- uUUUUCGCGAGAAGCGAGCAGAGCUGCa -3'
miRNA:   3'- -AAAAGCGCUCUUCGCUCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 8836 0.82 0.258151
Target:  5'- cUUUCGCGGGAAGCc-GCAGAGCgUGCc -3'
miRNA:   3'- aAAAGCGCUCUUCGcuCGUCUCG-ACG- -5'
24409 3' -52.7 NC_005264.1 + 63626 0.79 0.377236
Target:  5'- gUUUCGCGAGAgaAGCGGccGCGGAGgcCUGCg -3'
miRNA:   3'- aAAAGCGCUCU--UCGCU--CGUCUC--GACG- -5'
24409 3' -52.7 NC_005264.1 + 133072 0.76 0.538405
Target:  5'- ---gUGCGAGccGCGAGC-GAGCUGUg -3'
miRNA:   3'- aaaaGCGCUCuuCGCUCGuCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 30101 0.76 0.548723
Target:  5'- --aUCGCGAGucgagauGCGGGCGgcgcggcaccGAGCUGCg -3'
miRNA:   3'- aaaAGCGCUCuu-----CGCUCGU----------CUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 104803 0.74 0.654065
Target:  5'- cUUUCGCGAGA--CGAGCGGGcGCcGCa -3'
miRNA:   3'- aAAAGCGCUCUucGCUCGUCU-CGaCG- -5'
24409 3' -52.7 NC_005264.1 + 150699 0.73 0.696153
Target:  5'- ---gCGCGAGGcagGGCucucGGCGGGGCUGCc -3'
miRNA:   3'- aaaaGCGCUCU---UCGc---UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 31673 0.73 0.696153
Target:  5'- ---gCGCGAGGcagGGCucucGGCGGGGCUGCc -3'
miRNA:   3'- aaaaGCGCUCU---UCGc---UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 31164 0.73 0.706555
Target:  5'- gUUUCGUGuGAcgggggccggagGGCGAGCgagugggacggGGGGCUGCg -3'
miRNA:   3'- aAAAGCGCuCU------------UCGCUCG-----------UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 150191 0.73 0.706555
Target:  5'- gUUUCGUGuGAcgggggccggagGGCGAGCgagugggacggGGGGCUGCg -3'
miRNA:   3'- aAAAGCGCuCU------------UCGCUCG-----------UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 83917 0.73 0.706555
Target:  5'- ---cUGCGAGAGGCGAGaAGGaCUGCg -3'
miRNA:   3'- aaaaGCGCUCUUCGCUCgUCUcGACG- -5'
24409 3' -52.7 NC_005264.1 + 11632 0.72 0.776911
Target:  5'- --gUCGUG-GAacgguaucAGCGcGGCAGGGCUGCu -3'
miRNA:   3'- aaaAGCGCuCU--------UCGC-UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 42713 0.71 0.805182
Target:  5'- ---gCGCGAGA----GGUAGAGCUGCg -3'
miRNA:   3'- aaaaGCGCUCUucgcUCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 161739 0.71 0.805182
Target:  5'- ---gCGCGAGA----GGUAGAGCUGCg -3'
miRNA:   3'- aaaaGCGCUCUucgcUCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 81056 0.71 0.823204
Target:  5'- gUUUCGCGGGAA---AGCAGAcgguauGCUGCg -3'
miRNA:   3'- aAAAGCGCUCUUcgcUCGUCU------CGACG- -5'
24409 3' -52.7 NC_005264.1 + 135634 0.71 0.823204
Target:  5'- --cUCGCGGGAGauggcuauuGCGAGaucacggaccucUGGAGCUGCg -3'
miRNA:   3'- aaaAGCGCUCUU---------CGCUC------------GUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 123516 0.7 0.84048
Target:  5'- ---gCGCGAGGGucGCGAGCGGAGggGg -3'
miRNA:   3'- aaaaGCGCUCUU--CGCUCGUCUCgaCg -5'
24409 3' -52.7 NC_005264.1 + 4489 0.7 0.84048
Target:  5'- ---gCGCGAGGGucGCGAGCGGAGggGg -3'
miRNA:   3'- aaaaGCGCUCUU--CGCUCGUCUCgaCg -5'
24409 3' -52.7 NC_005264.1 + 117833 0.7 0.84048
Target:  5'- -gUUCGagGGGAGGCGcGGCGGAGUgcgcaUGCa -3'
miRNA:   3'- aaAAGCg-CUCUUCGC-UCGUCUCG-----ACG- -5'
24409 3' -52.7 NC_005264.1 + 111731 0.7 0.84048
Target:  5'- ---gCGuCGAGgcGCGAGCAGAccGCaGCa -3'
miRNA:   3'- aaaaGC-GCUCuuCGCUCGUCU--CGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.