miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 3' -52.7 NC_005264.1 + 37373 0.68 0.919577
Target:  5'- ----aGCGAGccucCGAGCAGGGCgcgGCa -3'
miRNA:   3'- aaaagCGCUCuuc-GCUCGUCUCGa--CG- -5'
24409 3' -52.7 NC_005264.1 + 155259 0.7 0.848817
Target:  5'- ---cCGCGAGGuuuAG-GGGCGGAGCcGCa -3'
miRNA:   3'- aaaaGCGCUCU---UCgCUCGUCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 20238 0.7 0.856944
Target:  5'- ---gCGCGuGAcgGGUGGGCAgGGGUUGCg -3'
miRNA:   3'- aaaaGCGCuCU--UCGCUCGU-CUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 132638 0.7 0.856944
Target:  5'- --aUCGCGgucGGGAcGCGGGCAgGGGCgGCg -3'
miRNA:   3'- aaaAGCGC---UCUU-CGCUCGU-CUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 8654 0.7 0.864852
Target:  5'- gUUUCGCGcGAAGUauucGGGCAu-GCUGCa -3'
miRNA:   3'- aAAAGCGCuCUUCG----CUCGUcuCGACG- -5'
24409 3' -52.7 NC_005264.1 + 150030 0.69 0.886491
Target:  5'- gUUUCGCGGGAgaucaucucucugGGCGAcggugccgccuaGCGGucgugcGGCUGCg -3'
miRNA:   3'- aAAAGCGCUCU-------------UCGCU------------CGUC------UCGACG- -5'
24409 3' -52.7 NC_005264.1 + 124287 0.69 0.905464
Target:  5'- ---gCGcCGGGAGGCGAgucgcggccggacgGCGGGGCgGCg -3'
miRNA:   3'- aaaaGC-GCUCUUCGCU--------------CGUCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 122840 0.69 0.907381
Target:  5'- ---cCGCGAGuucgGGCccGGGCGGGGCcGCa -3'
miRNA:   3'- aaaaGCGCUCu---UCG--CUCGUCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 59239 0.68 0.913606
Target:  5'- -aUUCGCGGGAAucGCG-GUAGcGGCUaGCa -3'
miRNA:   3'- aaAAGCGCUCUU--CGCuCGUC-UCGA-CG- -5'
24409 3' -52.7 NC_005264.1 + 123516 0.7 0.84048
Target:  5'- ---gCGCGAGGGucGCGAGCGGAGggGg -3'
miRNA:   3'- aaaaGCGCUCUU--CGCUCGUCUCgaCg -5'
24409 3' -52.7 NC_005264.1 + 108442 0.7 0.84048
Target:  5'- ---gCGUGGGGAGauuAGCGGAGUUGCc -3'
miRNA:   3'- aaaaGCGCUCUUCgc-UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 135634 0.71 0.823204
Target:  5'- --cUCGCGGGAGauggcuauuGCGAGaucacggaccucUGGAGCUGCg -3'
miRNA:   3'- aaaAGCGCUCUU---------CGCUC------------GUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 63626 0.79 0.377236
Target:  5'- gUUUCGCGAGAgaAGCGGccGCGGAGgcCUGCg -3'
miRNA:   3'- aAAAGCGCUCU--UCGCU--CGUCUC--GACG- -5'
24409 3' -52.7 NC_005264.1 + 133072 0.76 0.538405
Target:  5'- ---gUGCGAGccGCGAGC-GAGCUGUg -3'
miRNA:   3'- aaaaGCGCUCuuCGCUCGuCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 30101 0.76 0.548723
Target:  5'- --aUCGCGAGucgagauGCGGGCGgcgcggcaccGAGCUGCg -3'
miRNA:   3'- aaaAGCGCUCuu-----CGCUCGU----------CUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 150699 0.73 0.696153
Target:  5'- ---gCGCGAGGcagGGCucucGGCGGGGCUGCc -3'
miRNA:   3'- aaaaGCGCUCU---UCGc---UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 83917 0.73 0.706555
Target:  5'- ---cUGCGAGAGGCGAGaAGGaCUGCg -3'
miRNA:   3'- aaaaGCGCUCUUCGCUCgUCUcGACG- -5'
24409 3' -52.7 NC_005264.1 + 150191 0.73 0.706555
Target:  5'- gUUUCGUGuGAcgggggccggagGGCGAGCgagugggacggGGGGCUGCg -3'
miRNA:   3'- aAAAGCGCuCU------------UCGCUCG-----------UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 11632 0.72 0.776911
Target:  5'- --gUCGUG-GAacgguaucAGCGcGGCAGGGCUGCu -3'
miRNA:   3'- aaaAGCGCuCU--------UCGC-UCGUCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 161739 0.71 0.805182
Target:  5'- ---gCGCGAGA----GGUAGAGCUGCg -3'
miRNA:   3'- aaaaGCGCUCUucgcUCGUCUCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.