miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 30909 0.68 0.734292
Target:  5'- gGGAGGacuGCGAgGCCgGgCGgCUCGACGu -3'
miRNA:   3'- -CCUCC---UGCUaCGGgCgGUgGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 33600 0.67 0.798306
Target:  5'- --cGGACGAgGCuuGCCGCCgcuaaaguUCGGCc -3'
miRNA:   3'- ccuCCUGCUaCGggCGGUGG--------AGCUGu -5'
24409 5' -58.6 NC_005264.1 + 34133 0.68 0.743755
Target:  5'- cGAGGcGCGA-GCCCGCCucccccaagGCCUCgcuaGACGa -3'
miRNA:   3'- cCUCC-UGCUaCGGGCGG---------UGGAG----CUGU- -5'
24409 5' -58.6 NC_005264.1 + 34509 0.7 0.59678
Target:  5'- uGGGGGGCGGUGUCauaCGCCUuCGACc -3'
miRNA:   3'- -CCUCCUGCUACGGgcgGUGGA-GCUGu -5'
24409 5' -58.6 NC_005264.1 + 36014 0.66 0.847786
Target:  5'- cGAGG-CGuUGCCCGCCAauaCUCuGAg- -3'
miRNA:   3'- cCUCCuGCuACGGGCGGUg--GAG-CUgu -5'
24409 5' -58.6 NC_005264.1 + 36490 0.66 0.839961
Target:  5'- aGGcGGcguuuucguGCGAaGCgCGCgGCCUCGACGa -3'
miRNA:   3'- -CCuCC---------UGCUaCGgGCGgUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 37121 0.67 0.798306
Target:  5'- cGAGGGCGA-GgCgGCCGUCUCGGCc -3'
miRNA:   3'- cCUCCUGCUaCgGgCGGUGGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 38745 0.66 0.823783
Target:  5'- --cGGACGG-GCUgGCCGCCUugCGACc -3'
miRNA:   3'- ccuCCUGCUaCGGgCGGUGGA--GCUGu -5'
24409 5' -58.6 NC_005264.1 + 40255 0.68 0.703493
Target:  5'- cGGAGGAaguggcacgagaGAUGCUggaCGCCGCCgcgucgcgguUCGACGa -3'
miRNA:   3'- -CCUCCUg-----------CUACGG---GCGGUGG----------AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 40306 0.67 0.771557
Target:  5'- aGGcGGACGGcgaggauccccUGCCCcCCGCCgcgugCGGCGg -3'
miRNA:   3'- -CCuCCUGCU-----------ACGGGcGGUGGa----GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 41388 0.67 0.80695
Target:  5'- --cGGACG-UGUCCGCgGCCUCcGCu -3'
miRNA:   3'- ccuCCUGCuACGGGCGgUGGAGcUGu -5'
24409 5' -58.6 NC_005264.1 + 43903 0.73 0.428071
Target:  5'- cGGA-GACGAUaGCgcggCCGUCGCCUCGACGu -3'
miRNA:   3'- -CCUcCUGCUA-CG----GGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 45407 0.79 0.209865
Target:  5'- uGGAGGGCGgcGCCCuGCgCGCCgCGACAg -3'
miRNA:   3'- -CCUCCUGCuaCGGG-CG-GUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 49904 0.66 0.815445
Target:  5'- aGGA-GAgGAUG-CCGCCGCugaagCUCGACAc -3'
miRNA:   3'- -CCUcCUgCUACgGGCGGUG-----GAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 52907 0.66 0.815445
Target:  5'- aGGucGGCGAa--CCGCCACUUCGAgGg -3'
miRNA:   3'- -CCucCUGCUacgGGCGGUGGAGCUgU- -5'
24409 5' -58.6 NC_005264.1 + 55691 0.69 0.683932
Target:  5'- uGGGGAUGAacacguagcucaGCUCGCCGCCUaGACAg -3'
miRNA:   3'- cCUCCUGCUa-----------CGGGCGGUGGAgCUGU- -5'
24409 5' -58.6 NC_005264.1 + 61834 0.67 0.780601
Target:  5'- uGAGGACGAcccguaUCGCCAauccCCUCGGCGc -3'
miRNA:   3'- cCUCCUGCUacg---GGCGGU----GGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 68410 0.7 0.625524
Target:  5'- gGGAGGACGGgcUGCUCGCUcuggacuaccggcGCCgCGGCc -3'
miRNA:   3'- -CCUCCUGCU--ACGGGCGG-------------UGGaGCUGu -5'
24409 5' -58.6 NC_005264.1 + 73067 0.67 0.78952
Target:  5'- --uGGACGGaugGCCCGCgcggcaucucUACUUCGACGg -3'
miRNA:   3'- ccuCCUGCUa--CGGGCG----------GUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 76505 0.68 0.705438
Target:  5'- gGGGGGAauagGCgaccgucuaCCGCCGCUUCGGCGg -3'
miRNA:   3'- -CCUCCUgcuaCG---------GGCGGUGGAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.