miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 3420 0.66 0.815445
Target:  5'- gGGAgGGACGuagggccgcGCCCGCgCugCUCG-CAa -3'
miRNA:   3'- -CCU-CCUGCua-------CGGGCG-GugGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 3472 0.75 0.362515
Target:  5'- cGGGGGCGAUggGCuuGCCGCCgcacgCGGCGg -3'
miRNA:   3'- cCUCCUGCUA--CGggCGGUGGa----GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 3538 0.67 0.762396
Target:  5'- --cGGAUcaucuUGCCCGCCcCCUCGugGc -3'
miRNA:   3'- ccuCCUGcu---ACGGGCGGuGGAGCugU- -5'
24409 5' -58.6 NC_005264.1 + 3651 0.68 0.715126
Target:  5'- ----cGCGAUGgCCGCCGUCUCGACGa -3'
miRNA:   3'- ccuccUGCUACgGGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 3743 0.67 0.780601
Target:  5'- cGAGGAgCGggGCCUcuuGCCGCCggGGCGc -3'
miRNA:   3'- cCUCCU-GCuaCGGG---CGGUGGagCUGU- -5'
24409 5' -58.6 NC_005264.1 + 4688 0.66 0.831958
Target:  5'- -cGGGGCGAgugGCgCCGCguCCaCGACAg -3'
miRNA:   3'- ccUCCUGCUa--CG-GGCGguGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 4755 0.66 0.839961
Target:  5'- cGGGGGugGAccGCCgCGCgAaCUCGGCc -3'
miRNA:   3'- -CCUCCugCUa-CGG-GCGgUgGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 4976 0.72 0.500132
Target:  5'- --cGGcACGGUGCCCGCCAUCgUCGuCGu -3'
miRNA:   3'- ccuCC-UGCUACGGGCGGUGG-AGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 6135 0.7 0.626517
Target:  5'- gGGAGGGCGAgGgCCGCgCGCCcgUCGcGCAu -3'
miRNA:   3'- -CCUCCUGCUaCgGGCG-GUGG--AGC-UGU- -5'
24409 5' -58.6 NC_005264.1 + 8007 0.68 0.753125
Target:  5'- cGGGGccGGCaGAggcGCCCGCCACgaCGGCGc -3'
miRNA:   3'- -CCUC--CUG-CUa--CGGGCGGUGgaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 9684 0.72 0.500132
Target:  5'- gGGAGG-CGG-GCUCG-CGCCUCGACGc -3'
miRNA:   3'- -CCUCCuGCUaCGGGCgGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 9971 0.72 0.509526
Target:  5'- cGGAcccguGGGCGAUGCCgaGCCcaacgagcCCUCGACGa -3'
miRNA:   3'- -CCU-----CCUGCUACGGg-CGGu-------GGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 12206 0.83 0.121969
Target:  5'- -cAGGGCGAUGCgCGCCGCCUCGcCAg -3'
miRNA:   3'- ccUCCUGCUACGgGCGGUGGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 12964 0.69 0.676058
Target:  5'- --cGGGCGgcGCgCGCCGCCgaCGACGa -3'
miRNA:   3'- ccuCCUGCuaCGgGCGGUGGa-GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 14769 0.68 0.724746
Target:  5'- uGGAGGGCGAccacaagaUGCUguuccgUGCCACCcUgGACGa -3'
miRNA:   3'- -CCUCCUGCU--------ACGG------GCGGUGG-AgCUGU- -5'
24409 5' -58.6 NC_005264.1 + 16300 0.66 0.839961
Target:  5'- aGAGGcugGgGAUGUgCGCCGCacuCUCGACGc -3'
miRNA:   3'- cCUCC---UgCUACGgGCGGUG---GAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 16384 0.71 0.577067
Target:  5'- gGGAGGG-GAUGCCCGUgGCgcaUUGGCAc -3'
miRNA:   3'- -CCUCCUgCUACGGGCGgUGg--AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 18588 0.66 0.823783
Target:  5'- -aAGGcaGCGA-GCCagGCCACCUCGAa- -3'
miRNA:   3'- ccUCC--UGCUaCGGg-CGGUGGAGCUgu -5'
24409 5' -58.6 NC_005264.1 + 22060 0.69 0.646373
Target:  5'- --uGGACGGUaGCgCCGCCGCCggaaGGCGg -3'
miRNA:   3'- ccuCCUGCUA-CG-GGCGGUGGag--CUGU- -5'
24409 5' -58.6 NC_005264.1 + 27676 0.66 0.839961
Target:  5'- cGAGGuACGcgGCUgGCCucuGCCUCGcCGa -3'
miRNA:   3'- cCUCC-UGCuaCGGgCGG---UGGAGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.