miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 82733 0.66 0.831958
Target:  5'- --cGGACc--GCUagCGCCACCUCGAUAa -3'
miRNA:   3'- ccuCCUGcuaCGG--GCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 157771 0.66 0.823783
Target:  5'- --cGGACGG-GCUgGCCGCCUugCGACc -3'
miRNA:   3'- ccuCCUGCUaCGGgCGGUGGA--GCUGu -5'
24409 5' -58.6 NC_005264.1 + 123961 0.66 0.827073
Target:  5'- aGGAGGaaggcaacugucgugGCGGUGaCgCGUCACCgacUCGGCAc -3'
miRNA:   3'- -CCUCC---------------UGCUAC-GgGCGGUGG---AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 36014 0.66 0.847786
Target:  5'- cGAGG-CGuUGCCCGCCAauaCUCuGAg- -3'
miRNA:   3'- cCUCCuGCuACGGGCGGUg--GAG-CUgu -5'
24409 5' -58.6 NC_005264.1 + 142332 0.66 0.831148
Target:  5'- -cAGaGACGucuacgaAUGCaCCGCUACCUUGGCGu -3'
miRNA:   3'- ccUC-CUGC-------UACG-GGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 123715 0.66 0.831958
Target:  5'- -cGGGGCGAgugGCgCCGCguCCaCGACAg -3'
miRNA:   3'- ccUCCUGCUa--CG-GGCGguGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 36490 0.66 0.839961
Target:  5'- aGGcGGcguuuucguGCGAaGCgCGCgGCCUCGACGa -3'
miRNA:   3'- -CCuCC---------UGCUaCGgGCGgUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 123781 0.66 0.839961
Target:  5'- cGGGGGugGAccGCCgCGCgAaCUCGGCc -3'
miRNA:   3'- -CCUCCugCUa-CGG-GCGgUgGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 79708 0.66 0.839961
Target:  5'- uGAGGGCaGAcGCgccuCCGCgGCCUUGGCGc -3'
miRNA:   3'- cCUCCUG-CUaCG----GGCGgUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 18588 0.66 0.823783
Target:  5'- -aAGGcaGCGA-GCCagGCCACCUCGAa- -3'
miRNA:   3'- ccUCC--UGCUaCGGg-CGGUGGAGCUgu -5'
24409 5' -58.6 NC_005264.1 + 52907 0.66 0.815445
Target:  5'- aGGucGGCGAa--CCGCCACUUCGAgGg -3'
miRNA:   3'- -CCucCUGCUacgGGCGGUGGAGCUgU- -5'
24409 5' -58.6 NC_005264.1 + 121729 0.66 0.847786
Target:  5'- cGGAGGAgGGaGUCCagauagGCCGCCcCGGCc -3'
miRNA:   3'- -CCUCCUgCUaCGGG------CGGUGGaGCUGu -5'
24409 5' -58.6 NC_005264.1 + 120139 0.66 0.847786
Target:  5'- aGGAGGACGGagcGCCgGCCgGCgaUGACc -3'
miRNA:   3'- -CCUCCUGCUa--CGGgCGG-UGgaGCUGu -5'
24409 5' -58.6 NC_005264.1 + 77832 0.66 0.850865
Target:  5'- aGAGGACaguUGCCCGauaugaugcuuaucuCCGCCaCGACGc -3'
miRNA:   3'- cCUCCUGcu-ACGGGC---------------GGUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 118039 0.66 0.847786
Target:  5'- uGGAGGuuugcCGcgGCgaCCGCgGCgUCGGCAa -3'
miRNA:   3'- -CCUCCu----GCuaCG--GGCGgUGgAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 122447 0.66 0.815445
Target:  5'- gGGAgGGACGuagggccgcGCCCGCgCugCUCG-CAa -3'
miRNA:   3'- -CCU-CCUGCua-------CGGGCG-GugGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 108372 0.66 0.823783
Target:  5'- uGGGcGACGAcgGCCCuuaCCAgCUCGGCGg -3'
miRNA:   3'- cCUC-CUGCUa-CGGGc--GGUgGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 27676 0.66 0.839961
Target:  5'- cGAGGuACGcgGCUgGCCucuGCCUCGcCGa -3'
miRNA:   3'- cCUCC-UGCuaCGGgCGG---UGGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 115873 0.66 0.847786
Target:  5'- -uGGGuucuCGA-GCCCGCCACC-CGGgGg -3'
miRNA:   3'- ccUCCu---GCUaCGGGCGGUGGaGCUgU- -5'
24409 5' -58.6 NC_005264.1 + 88927 0.66 0.847012
Target:  5'- uGGAGGACaagaacaGGUGCCuggcaCGCCugCUgCGAgAg -3'
miRNA:   3'- -CCUCCUG-------CUACGG-----GCGGugGA-GCUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.