miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 153160 0.68 0.743755
Target:  5'- cGAGGcGCGA-GCCCGCCucccccaagGCCUCgcuaGACGa -3'
miRNA:   3'- cCUCC-UGCUaCGGGCGG---------UGGAG----CUGU- -5'
24409 5' -58.6 NC_005264.1 + 22060 0.69 0.646373
Target:  5'- --uGGACGGUaGCgCCGCCGCCggaaGGCGg -3'
miRNA:   3'- ccuCCUGCUA-CG-GGCGGUGGag--CUGU- -5'
24409 5' -58.6 NC_005264.1 + 95853 0.69 0.695692
Target:  5'- aGGGGaACGAgaaaccaggucuUGCCgUGCCGCCUgGGCAc -3'
miRNA:   3'- cCUCC-UGCU------------ACGG-GCGGUGGAgCUGU- -5'
24409 5' -58.6 NC_005264.1 + 159282 0.68 0.703493
Target:  5'- cGGAGGAaguggcacgagaGAUGCUggaCGCCGCCgcgucgcgguUCGACGa -3'
miRNA:   3'- -CCUCCUg-----------CUACGG---GCGGUGG----------AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 122678 0.68 0.715126
Target:  5'- ----cGCGAUGgCCGCCGUCUCGACGa -3'
miRNA:   3'- ccuccUGCUACgGGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 149935 0.68 0.715126
Target:  5'- gGGAGGacuGCGAgGCCgGgCGgCUCGACGg -3'
miRNA:   3'- -CCUCC---UGCUaCGGgCgGUgGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 94599 0.68 0.715126
Target:  5'- cGAGGAaGAcaaGCCCGCCGCCggcgCGGa- -3'
miRNA:   3'- cCUCCUgCUa--CGGGCGGUGGa---GCUgu -5'
24409 5' -58.6 NC_005264.1 + 14769 0.68 0.724746
Target:  5'- uGGAGGGCGAccacaagaUGCUguuccgUGCCACCcUgGACGa -3'
miRNA:   3'- -CCUCCUGCU--------ACGG------GCGGUGG-AgCUGU- -5'
24409 5' -58.6 NC_005264.1 + 139505 0.68 0.738088
Target:  5'- cGGGGcagaccccgcuggccGCGAUguugugGCCCGCCGCaCUCGugGc -3'
miRNA:   3'- cCUCC---------------UGCUA------CGGGCGGUG-GAGCugU- -5'
24409 5' -58.6 NC_005264.1 + 106507 0.7 0.636447
Target:  5'- uGGGGGGC----UCCGCCACgUCGACGc -3'
miRNA:   3'- -CCUCCUGcuacGGGCGGUGgAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 125162 0.7 0.626517
Target:  5'- gGGAGGGCGAgGgCCGCgCGCCcgUCGcGCAu -3'
miRNA:   3'- -CCUCCUGCUaCgGGCG-GUGG--AGC-UGU- -5'
24409 5' -58.6 NC_005264.1 + 68410 0.7 0.625524
Target:  5'- gGGAGGACGGgcUGCUCGCUcuggacuaccggcGCCgCGGCc -3'
miRNA:   3'- -CCUCCUGCU--ACGGGCGG-------------UGGaGCUGu -5'
24409 5' -58.6 NC_005264.1 + 122499 0.75 0.362515
Target:  5'- cGGGGGCGAUggGCuuGCCGCCgcacgCGGCGg -3'
miRNA:   3'- cCUCCUGCUA--CGggCGGUGGa----GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 128711 0.72 0.500132
Target:  5'- gGGAGG-CGG-GCUCG-CGCCUCGACGc -3'
miRNA:   3'- -CCUCCuGCUaCGGGCgGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 131990 0.71 0.538129
Target:  5'- --cGGGCGgcGCgCCGCCGCCgaCGACGa -3'
miRNA:   3'- ccuCCUGCuaCG-GGCGGUGGa-GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 16384 0.71 0.577067
Target:  5'- gGGAGGG-GAUGCCCGUgGCgcaUUGGCAc -3'
miRNA:   3'- -CCUCCUgCUACGGGCGgUGg--AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 139998 0.7 0.586908
Target:  5'- gGGAGGACGAcguUGCUguaccccucuCGCUACCUacacgcucgCGACAg -3'
miRNA:   3'- -CCUCCUGCU---ACGG----------GCGGUGGA---------GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 34509 0.7 0.59678
Target:  5'- uGGGGGGCGGUGUCauaCGCCUuCGACc -3'
miRNA:   3'- -CCUCCUGCUACGGgcgGUGGA-GCUGu -5'
24409 5' -58.6 NC_005264.1 + 91309 0.7 0.606677
Target:  5'- -cAGGGCGAUGCCCG-UACCggaGGCGc -3'
miRNA:   3'- ccUCCUGCUACGGGCgGUGGag-CUGU- -5'
24409 5' -58.6 NC_005264.1 + 76654 0.7 0.616591
Target:  5'- cGAGGcCGAUG-CgGCCACCggugCGGCAg -3'
miRNA:   3'- cCUCCuGCUACgGgCGGUGGa---GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.