miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 106585 1.11 0.001554
Target:  5'- cGGAGGACGAUGCCCGCCACCUCGACAa -3'
miRNA:   3'- -CCUCCUGCUACGGGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 131233 0.83 0.121969
Target:  5'- -cAGGGCGAUGCgCGCCGCCUCGcCAg -3'
miRNA:   3'- ccUCCUGCUACGgGCGGUGGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 12206 0.83 0.121969
Target:  5'- -cAGGGCGAUGCgCGCCGCCUCGcCAg -3'
miRNA:   3'- ccUCCUGCUACGgGCGGUGGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 120730 0.82 0.125088
Target:  5'- cGGAGGACGGUGCCgGCgACUgCGACGa -3'
miRNA:   3'- -CCUCCUGCUACGGgCGgUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 45407 0.79 0.209865
Target:  5'- uGGAGGGCGgcGCCCuGCgCGCCgCGACAg -3'
miRNA:   3'- -CCUCCUGCuaCGGG-CG-GUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 3472 0.75 0.362515
Target:  5'- cGGGGGCGAUggGCuuGCCGCCgcacgCGGCGg -3'
miRNA:   3'- cCUCCUGCUA--CGggCGGUGGa----GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 122499 0.75 0.362515
Target:  5'- cGGGGGCGAUggGCuuGCCGCCgcacgCGGCGg -3'
miRNA:   3'- cCUCCUGCUA--CGggCGGUGGa----GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 43903 0.73 0.428071
Target:  5'- cGGA-GACGAUaGCgcggCCGUCGCCUCGACGu -3'
miRNA:   3'- -CCUcCUGCUA-CG----GGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 131653 0.72 0.490815
Target:  5'- cGGucuGCGGUGCCCGCCGCCagaccguuggCGGCAc -3'
miRNA:   3'- -CCuccUGCUACGGGCGGUGGa---------GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 128711 0.72 0.500132
Target:  5'- gGGAGG-CGG-GCUCG-CGCCUCGACGc -3'
miRNA:   3'- -CCUCCuGCUaCGGGCgGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 4976 0.72 0.500132
Target:  5'- --cGGcACGGUGCCCGCCAUCgUCGuCGu -3'
miRNA:   3'- ccuCC-UGCUACGGGCGGUGG-AGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 9684 0.72 0.500132
Target:  5'- gGGAGG-CGG-GCUCG-CGCCUCGACGc -3'
miRNA:   3'- -CCUCCuGCUaCGGGCgGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 9971 0.72 0.509526
Target:  5'- cGGAcccguGGGCGAUGCCgaGCCcaacgagcCCUCGACGa -3'
miRNA:   3'- -CCU-----CCUGCUACGGg-CGGu-------GGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 131990 0.71 0.538129
Target:  5'- --cGGGCGgcGCgCCGCCGCCgaCGACGa -3'
miRNA:   3'- ccuCCUGCuaCG-GGCGGUGGa-GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 111631 0.71 0.577067
Target:  5'- cGAGGACG-UGUaCCGCCGCUauugCGACGu -3'
miRNA:   3'- cCUCCUGCuACG-GGCGGUGGa---GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 16384 0.71 0.577067
Target:  5'- gGGAGGG-GAUGCCCGUgGCgcaUUGGCAc -3'
miRNA:   3'- -CCUCCUgCUACGGGCGgUGg--AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 139998 0.7 0.586908
Target:  5'- gGGAGGACGAcguUGCUguaccccucuCGCUACCUacacgcucgCGACAg -3'
miRNA:   3'- -CCUCCUGCU---ACGG----------GCGGUGGA---------GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 34509 0.7 0.59678
Target:  5'- uGGGGGGCGGUGUCauaCGCCUuCGACc -3'
miRNA:   3'- -CCUCCUGCUACGGgcgGUGGA-GCUGu -5'
24409 5' -58.6 NC_005264.1 + 91309 0.7 0.606677
Target:  5'- -cAGGGCGAUGCCCG-UACCggaGGCGc -3'
miRNA:   3'- ccUCCUGCUACGGGCgGUGGag-CUGU- -5'
24409 5' -58.6 NC_005264.1 + 80633 0.7 0.616591
Target:  5'- cGAGGACGAUGgaCgCGCgGCCaCGACAc -3'
miRNA:   3'- cCUCCUGCUACg-G-GCGgUGGaGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.