miRNA display CGI


Results 1 - 20 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 124630 0.66 0.668111
Target:  5'- gAUCGGCGA--CCGGAGCcgcuaucgGGCCGCGcGAc -3'
miRNA:   3'- -UGGCUGCUggGGCUUCG--------CCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 94377 0.66 0.668111
Target:  5'- cACCGACGAaguggugucgucCCUCGucuauGaucaGGCCGCGGc -3'
miRNA:   3'- -UGGCUGCU------------GGGGCuu---Cg---CCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 89947 0.66 0.668111
Target:  5'- gGCCGAau-CCCUGAAGCaGGCaagccguGUGGAa -3'
miRNA:   3'- -UGGCUgcuGGGGCUUCG-CCGg------CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 5603 0.66 0.668111
Target:  5'- gAUCGGCGA--CCGGAGCcgcuaucgGGCCGCGcGAc -3'
miRNA:   3'- -UGGCUGCUggGGCUUCG--------CCGGCGC-CU- -5'
24421 5' -62.9 NC_005264.1 + 49596 0.66 0.668111
Target:  5'- cGCCGGCGACCaggacgaCGggGgGcGCUcgGUGGGg -3'
miRNA:   3'- -UGGCUGCUGGg------GCuuCgC-CGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 124364 0.66 0.668111
Target:  5'- --aGACGAagcggucgcucgUCCCG-GGCGGCCucGCGGAu -3'
miRNA:   3'- uggCUGCU------------GGGGCuUCGCCGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 136662 0.66 0.668111
Target:  5'- cGCCaACGGCCCCGccGacaGuGCCGCGa- -3'
miRNA:   3'- -UGGcUGCUGGGGCuuCg--C-CGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 65161 0.66 0.668111
Target:  5'- cACCGcgGCGGCgCCCucucuGGCcauGGCCGCGGc -3'
miRNA:   3'- -UGGC--UGCUG-GGGcu---UCG---CCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 5337 0.66 0.668111
Target:  5'- --aGACGAagcggucgcucgUCCCG-GGCGGCCucGCGGAu -3'
miRNA:   3'- uggCUGCU------------GGGGCuUCGCCGG--CGCCU- -5'
24421 5' -62.9 NC_005264.1 + 45737 0.66 0.666192
Target:  5'- cAUCGACGGCUCCGAaaacugccauaGGaccccugcgcggGGCgCGCGGAg -3'
miRNA:   3'- -UGGCUGCUGGGGCU-----------UCg-----------CCG-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 156195 0.66 0.665232
Target:  5'- uGCCGGagcuuccggacaugUGcCCCCGc-GUGGCCGUGGGc -3'
miRNA:   3'- -UGGCU--------------GCuGGGGCuuCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 37168 0.66 0.665232
Target:  5'- uGCCGGagcuuccggacaugUGcCCCCGc-GUGGCCGUGGGc -3'
miRNA:   3'- -UGGCU--------------GCuGGGGCuuCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 24230 0.66 0.65851
Target:  5'- cACCuGACGAugacuugcaCCCCaccGCuGCCGCGGAa -3'
miRNA:   3'- -UGG-CUGCU---------GGGGcuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 39955 0.66 0.65851
Target:  5'- -aCGGCGACCUCGGcuGCGaGuCUGCGGu -3'
miRNA:   3'- ugGCUGCUGGGGCUu-CGC-C-GGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 51677 0.66 0.65851
Target:  5'- aGCCGGCaGCUCaGGAGgGGUCGUGGu -3'
miRNA:   3'- -UGGCUGcUGGGgCUUCgCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 118047 0.66 0.65851
Target:  5'- uGCCGcgGCGACCgCGGcgucGGCaacgaucGCCGCGGGc -3'
miRNA:   3'- -UGGC--UGCUGGgGCU----UCGc------CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 158982 0.66 0.65851
Target:  5'- -aCGGCGACCUCGGcuGCGaGuCUGCGGu -3'
miRNA:   3'- ugGCUGCUGGGGCUu-CGC-C-GGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 95366 0.66 0.657548
Target:  5'- -gCGGCGGCCCgGccucggguuucacGAGCuGGCCGCGc- -3'
miRNA:   3'- ugGCUGCUGGGgC-------------UUCG-CCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 157347 0.66 0.64889
Target:  5'- gGCCGACGaggguuggcggGCCCUGGccgugaugcugGGCGGCgggGCGGu -3'
miRNA:   3'- -UGGCUGC-----------UGGGGCU-----------UCGCCGg--CGCCu -5'
24421 5' -62.9 NC_005264.1 + 126159 0.66 0.64889
Target:  5'- gGCCGACuGAgCCgaCGAAacGUGGUCGCGGc -3'
miRNA:   3'- -UGGCUG-CUgGG--GCUU--CGCCGGCGCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.