miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24421 5' -62.9 NC_005264.1 + 18055 0.67 0.591157
Target:  5'- -gCGGCGGCgCCGcGAGCcagGGCgCGCGGGc -3'
miRNA:   3'- ugGCUGCUGgGGC-UUCG---CCG-GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 19422 0.69 0.470742
Target:  5'- -gCGA-GGCgCCGGGuGUGGCCGCGGGg -3'
miRNA:   3'- ugGCUgCUGgGGCUU-CGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 20283 0.68 0.543708
Target:  5'- gACCGucugcgcgcuuGCGGCCCCGAGG-GGCUGaGGu -3'
miRNA:   3'- -UGGC-----------UGCUGGGGCUUCgCCGGCgCCu -5'
24421 5' -62.9 NC_005264.1 + 21242 0.71 0.387155
Target:  5'- cGuuGACGACggCUCGAGuguGCGcGCCGCGGAg -3'
miRNA:   3'- -UggCUGCUG--GGGCUU---CGC-CGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 21941 0.66 0.619987
Target:  5'- uGCCGcuuCGAUggucgaugCCCGAgAGUGGUCGCGGc -3'
miRNA:   3'- -UGGCu--GCUG--------GGGCU-UCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 22049 0.67 0.581592
Target:  5'- gACCGACG-CCuuGGacgguAGCGccGCCGcCGGAa -3'
miRNA:   3'- -UGGCUGCuGGggCU-----UCGC--CGGC-GCCU- -5'
24421 5' -62.9 NC_005264.1 + 24230 0.66 0.65851
Target:  5'- cACCuGACGAugacuugcaCCCCaccGCuGCCGCGGAa -3'
miRNA:   3'- -UGG-CUGCU---------GGGGcuuCGcCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 28490 0.67 0.610361
Target:  5'- uCCGACGAUCCCGuAGC-GCUGCc-- -3'
miRNA:   3'- uGGCUGCUGGGGCuUCGcCGGCGccu -5'
24421 5' -62.9 NC_005264.1 + 30953 0.74 0.251711
Target:  5'- cAUCGGCGACCCCGAAcCGucuGgCGCGGAa -3'
miRNA:   3'- -UGGCUGCUGGGGCUUcGC---CgGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 33872 0.67 0.562564
Target:  5'- -aCGugGAgcgucCgCUCGAGGCGGCgGUGGAa -3'
miRNA:   3'- ugGCugCU-----G-GGGCUUCGCCGgCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 33998 0.68 0.553112
Target:  5'- -gCGGCGGCCCaUGuAGcCGGCCGCGu- -3'
miRNA:   3'- ugGCUGCUGGG-GCuUC-GCCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 35263 0.67 0.591157
Target:  5'- gACCGAaaacacUGGCgCgGgcGCGGCCGUGGu -3'
miRNA:   3'- -UGGCU------GCUGgGgCuuCGCCGGCGCCu -5'
24421 5' -62.9 NC_005264.1 + 35742 0.75 0.214461
Target:  5'- cGCCGccCGugCCCGAcuGCGGCCGCGa- -3'
miRNA:   3'- -UGGCu-GCugGGGCUu-CGCCGGCGCcu -5'
24421 5' -62.9 NC_005264.1 + 35818 0.68 0.534357
Target:  5'- uCUGcCGGCCCCGcaauGGCGGCCcgugcaCGGAc -3'
miRNA:   3'- uGGCuGCUGGGGCu---UCGCCGGc-----GCCU- -5'
24421 5' -62.9 NC_005264.1 + 35960 0.76 0.186392
Target:  5'- cGCCGACGAUggcgauucgCCUGGAGgGGgCGCGGAg -3'
miRNA:   3'- -UGGCUGCUG---------GGGCUUCgCCgGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 36410 0.71 0.348456
Target:  5'- aGCUGACGugaggcGCCCC-AAGUaccugcaGGCCGCGGAg -3'
miRNA:   3'- -UGGCUGC------UGGGGcUUCG-------CCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 36509 0.68 0.534357
Target:  5'- aGCgCG-CGGCCUCGAcgaGGCGGgCGCaGGAg -3'
miRNA:   3'- -UG-GCuGCUGGGGCU---UCGCCgGCG-CCU- -5'
24421 5' -62.9 NC_005264.1 + 36546 0.67 0.610361
Target:  5'- gGCCG-CG-CgCCCGaAAGCGGCauggccgccucCGCGGAc -3'
miRNA:   3'- -UGGCuGCuG-GGGC-UUCGCCG-----------GCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 37168 0.66 0.665232
Target:  5'- uGCCGGagcuuccggacaugUGcCCCCGc-GUGGCCGUGGGc -3'
miRNA:   3'- -UGGCU--------------GCuGGGGCuuCGCCGGCGCCU- -5'
24421 5' -62.9 NC_005264.1 + 37569 0.7 0.402279
Target:  5'- gACCG-CGACggaggcggcaaguCUCGcGGCGGCCGCGGc -3'
miRNA:   3'- -UGGCuGCUG-------------GGGCuUCGCCGGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.