Results 1 - 20 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24421 | 5' | -62.9 | NC_005264.1 | + | 5603 | 0.66 | 0.668111 |
Target: 5'- gAUCGGCGA--CCGGAGCcgcuaucgGGCCGCGcGAc -3' miRNA: 3'- -UGGCUGCUggGGCUUCG--------CCGGCGC-CU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 92180 | 0.66 | 0.619987 |
Target: 5'- uGCCGGCGGCgCC---GCGGCCaCGGu -3' miRNA: 3'- -UGGCUGCUGgGGcuuCGCCGGcGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 101036 | 0.67 | 0.610361 |
Target: 5'- cCCGGCGAUgCCc--GCGGCCcgGUGGAg -3' miRNA: 3'- uGGCUGCUGgGGcuuCGCCGG--CGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 100610 | 1.07 | 0.001123 |
Target: 5'- uACCGACGACCCCGAAGCGGCCGCGGAg -3' miRNA: 3'- -UGGCUGCUGGGGCUUCGCCGGCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 37168 | 0.66 | 0.665232 |
Target: 5'- uGCCGGagcuuccggacaugUGcCCCCGc-GUGGCCGUGGGc -3' miRNA: 3'- -UGGCU--------------GCuGGGGCuuCGCCGGCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 39955 | 0.66 | 0.65851 |
Target: 5'- -aCGGCGACCUCGGcuGCGaGuCUGCGGu -3' miRNA: 3'- ugGCUGCUGGGGCUu-CGC-C-GGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 95366 | 0.66 | 0.657548 |
Target: 5'- -gCGGCGGCCCgGccucggguuucacGAGCuGGCCGCGc- -3' miRNA: 3'- ugGCUGCUGGGgC-------------UUCG-CCGGCGCcu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 7132 | 0.66 | 0.64889 |
Target: 5'- gGCCGACuGAgCCgaCGAAacGUGGUCGCGGc -3' miRNA: 3'- -UGGCUG-CUgGG--GCUU--CGCCGGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 99803 | 0.66 | 0.639258 |
Target: 5'- gGCCGAggcgauggucgcCGACCCCGggGUaaGGCU--GGAg -3' miRNA: 3'- -UGGCU------------GCUGGGGCuuCG--CCGGcgCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 42361 | 0.66 | 0.619987 |
Target: 5'- cGCCGGCGAUggCCGguGCuGGCuccCGCGGAg -3' miRNA: 3'- -UGGCUGCUGg-GGCuuCG-CCG---GCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 100089 | 0.66 | 0.638295 |
Target: 5'- aGCaUGGCGGCCgCGggGCucagcgacgacgcGGuuGCGGGa -3' miRNA: 3'- -UG-GCUGCUGGgGCuuCG-------------CCggCGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 10004 | 0.66 | 0.64889 |
Target: 5'- cUCGACGAgCCCCGuAGCccgcGCCGUucGGAa -3' miRNA: 3'- uGGCUGCU-GGGGCuUCGc---CGGCG--CCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 94377 | 0.66 | 0.668111 |
Target: 5'- cACCGACGAaguggugucgucCCUCGucuauGaucaGGCCGCGGc -3' miRNA: 3'- -UGGCUGCU------------GGGGCuu---Cg---CCGGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 113261 | 0.66 | 0.629622 |
Target: 5'- cGCCGGCGGCgUgcgccgagaaggUGAAGCGGUCGCu-- -3' miRNA: 3'- -UGGCUGCUGgG------------GCUUCGCCGGCGccu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 89947 | 0.66 | 0.668111 |
Target: 5'- gGCCGAau-CCCUGAAGCaGGCaagccguGUGGAa -3' miRNA: 3'- -UGGCUgcuGGGGCUUCG-CCGg------CGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 38320 | 0.66 | 0.64889 |
Target: 5'- gGCCGACGaggguuggcggGCCCUGGccgugaugcugGGCGGCgggGCGGu -3' miRNA: 3'- -UGGCUGC-----------UGGGGCU-----------UCGCCGg--CGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 106920 | 0.66 | 0.628658 |
Target: 5'- aGCCGGgucacuuuuuccuCGACagCUGcGGCGGCCGCaGGAu -3' miRNA: 3'- -UGGCU-------------GCUGg-GGCuUCGCCGGCG-CCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 21941 | 0.66 | 0.619987 |
Target: 5'- uGCCGcuuCGAUggucgaugCCCGAgAGUGGUCGCGGc -3' miRNA: 3'- -UGGCu--GCUG--------GGGCU-UCGCCGGCGCCu -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 5337 | 0.66 | 0.668111 |
Target: 5'- --aGACGAagcggucgcucgUCCCG-GGCGGCCucGCGGAu -3' miRNA: 3'- uggCUGCU------------GGGGCuUCGCCGG--CGCCU- -5' |
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24421 | 5' | -62.9 | NC_005264.1 | + | 24230 | 0.66 | 0.65851 |
Target: 5'- cACCuGACGAugacuugcaCCCCaccGCuGCCGCGGAa -3' miRNA: 3'- -UGG-CUGCU---------GGGGcuuCGcCGGCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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