miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24425 3' -58.8 NC_005264.1 + 42141 0.67 0.7735
Target:  5'- -cGcCGGCUUUgUCGGCGCGag-GCCu -3'
miRNA:   3'- guCcGCUGAGAgAGCCGCGCgaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 43653 0.68 0.687379
Target:  5'- gUAGGUGuACgg--UCGGCGCGCUgcgcGCCg -3'
miRNA:   3'- -GUCCGC-UGagagAGCCGCGCGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 46526 0.66 0.825888
Target:  5'- gCAGGCcGCUC---CGGCGCGCaagaaGCCc -3'
miRNA:   3'- -GUCCGcUGAGagaGCCGCGCGaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 49360 0.66 0.825888
Target:  5'- --cGCGGCaagaUCGGCGCGUaUUGCCu -3'
miRNA:   3'- gucCGCUGagagAGCCGCGCG-AACGG- -5'
24425 3' -58.8 NC_005264.1 + 52168 0.66 0.790643
Target:  5'- uCAGGUag--CUCUCGGCGCuccugauaaauguGCUgaggGCCg -3'
miRNA:   3'- -GUCCGcugaGAGAGCCGCG-------------CGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 54564 0.69 0.667543
Target:  5'- uCAGcGCGAUUCUCgUGGgGCGCgacggGUCg -3'
miRNA:   3'- -GUC-CGCUGAGAGaGCCgCGCGaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 56100 0.68 0.684413
Target:  5'- aCAGGCGGCUCccccgcaccauccuUgUCgaccacuaGGCGCGCgagUGUCg -3'
miRNA:   3'- -GUCCGCUGAG--------------AgAG--------CCGCGCGa--ACGG- -5'
24425 3' -58.8 NC_005264.1 + 58288 0.67 0.764299
Target:  5'- aCAGaGCuuCUucCUCUgaUGGCGCGCUUcGCCg -3'
miRNA:   3'- -GUC-CGcuGA--GAGA--GCCGCGCGAA-CGG- -5'
24425 3' -58.8 NC_005264.1 + 59708 0.67 0.7735
Target:  5'- -cGGCGucgguuaUCUC-CGGCGCGCaugGCUc -3'
miRNA:   3'- guCCGCug-----AGAGaGCCGCGCGaa-CGG- -5'
24425 3' -58.8 NC_005264.1 + 61438 0.66 0.809016
Target:  5'- -cGGCGGCccgCUcCUCGGCGcCGagUUGCUc -3'
miRNA:   3'- guCCGCUGa--GA-GAGCCGC-GCg-AACGG- -5'
24425 3' -58.8 NC_005264.1 + 62993 0.68 0.726461
Target:  5'- -uGGCgGACUC-CaaGGCGUGCUUGgCg -3'
miRNA:   3'- guCCG-CUGAGaGagCCGCGCGAACgG- -5'
24425 3' -58.8 NC_005264.1 + 66592 0.67 0.764299
Target:  5'- aCAGGCu-CUCgCUgGGCuGCGCcgcgUUGCCg -3'
miRNA:   3'- -GUCCGcuGAGaGAgCCG-CGCG----AACGG- -5'
24425 3' -58.8 NC_005264.1 + 67728 0.68 0.726461
Target:  5'- gGGGCGGCUucggggcaaaggCUCUCagcgaaaucagGGCGuCGCUUaucGCCa -3'
miRNA:   3'- gUCCGCUGA------------GAGAG-----------CCGC-GCGAA---CGG- -5'
24425 3' -58.8 NC_005264.1 + 68122 0.7 0.587712
Target:  5'- aAGGCGcGCUCauaCUCGGCGgGgaUGUCg -3'
miRNA:   3'- gUCCGC-UGAGa--GAGCCGCgCgaACGG- -5'
24425 3' -58.8 NC_005264.1 + 69402 0.68 0.726461
Target:  5'- uGGGCGGgUa----GGCGCGCcUGCCg -3'
miRNA:   3'- gUCCGCUgAgagagCCGCGCGaACGG- -5'
24425 3' -58.8 NC_005264.1 + 72687 0.66 0.817532
Target:  5'- -uGGCGGCgUUCgugacgCGGCGCaauGCUuUGCCu -3'
miRNA:   3'- guCCGCUGaGAGa-----GCCGCG---CGA-ACGG- -5'
24425 3' -58.8 NC_005264.1 + 73363 0.67 0.754986
Target:  5'- -uGGuCGACgcgcggugCUUUUGGCGCgGCUcUGCCa -3'
miRNA:   3'- guCC-GCUGa-------GAGAGCCGCG-CGA-ACGG- -5'
24425 3' -58.8 NC_005264.1 + 74663 0.68 0.697236
Target:  5'- gCAGGCcGCUCUUgagcUGGUGCGUUagcGCCa -3'
miRNA:   3'- -GUCCGcUGAGAGa---GCCGCGCGAa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 79102 0.67 0.736058
Target:  5'- cCGGGgaGACgcuuaagCUCGGCacggcggcguGCGCUUGCCc -3'
miRNA:   3'- -GUCCg-CUGaga----GAGCCG----------CGCGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 80544 0.66 0.805566
Target:  5'- -cGGCGGCauucuauauuccgUUCUCGGCggacccuucGCGCUccggUGCCg -3'
miRNA:   3'- guCCGCUGa------------GAGAGCCG---------CGCGA----ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.