miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24425 3' -58.8 NC_005264.1 + 3668 0.66 0.800347
Target:  5'- gGGGCGACUggCaUUGGUGCGgg-GCCu -3'
miRNA:   3'- gUCCGCUGAgaG-AGCCGCGCgaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 5357 0.73 0.403023
Target:  5'- cCGGGCGGC-CUCgcggaugauucacacCGGCGCucgauuGCUUGCCa -3'
miRNA:   3'- -GUCCGCUGaGAGa--------------GCCGCG------CGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 5413 0.66 0.809016
Target:  5'- aGGGCGuacgcggcauCUgUCUCGGCGuCGCcgcucucGCCg -3'
miRNA:   3'- gUCCGCu---------GAgAGAGCCGC-GCGaa-----CGG- -5'
24425 3' -58.8 NC_005264.1 + 6873 0.72 0.471495
Target:  5'- gCGGGCuugUUUCUCGGCGCGUguugcugUUGCCu -3'
miRNA:   3'- -GUCCGcugAGAGAGCCGCGCG-------AACGG- -5'
24425 3' -58.8 NC_005264.1 + 9869 0.69 0.657579
Target:  5'- uCGGGCG-CggUCcCGGCGCGCcacgGCCu -3'
miRNA:   3'- -GUCCGCuGagAGaGCCGCGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 9923 0.66 0.825888
Target:  5'- --cGCGACUgcgggCUUUgCGGCGCGCUgagaGCUa -3'
miRNA:   3'- gucCGCUGA-----GAGA-GCCGCGCGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 13406 0.66 0.791532
Target:  5'- --cGCaGCUCUCcgcacCGGCGCGCgaccGCCg -3'
miRNA:   3'- gucCGcUGAGAGa----GCCGCGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 16485 0.75 0.346453
Target:  5'- gGGGCGACgagucacaugcgUCaUUCGGCGCGCacGCCg -3'
miRNA:   3'- gUCCGCUG------------AGaGAGCCGCGCGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 18422 0.7 0.587712
Target:  5'- gCAGGCGcgccCUCUCgcUCGGCGCGgg-GUCg -3'
miRNA:   3'- -GUCCGCu---GAGAG--AGCCGCGCgaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 20262 0.67 0.781678
Target:  5'- gCGGcGCGGC-CUCgcggaggggaccgUCuGCGCGCUUGCg -3'
miRNA:   3'- -GUC-CGCUGaGAG-------------AGcCGCGCGAACGg -5'
24425 3' -58.8 NC_005264.1 + 26711 0.69 0.637602
Target:  5'- -uGGUuuCUCUUugucuUCGGCGCGCUaacuUGCCc -3'
miRNA:   3'- guCCGcuGAGAG-----AGCCGCGCGA----ACGG- -5'
24425 3' -58.8 NC_005264.1 + 28027 0.7 0.577799
Target:  5'- gGGGCGGgaggUCUUcCGGCGCGCgcgacGCCg -3'
miRNA:   3'- gUCCGCUg---AGAGaGCCGCGCGaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 31352 0.67 0.74557
Target:  5'- cCAGGUG-CUCg---GGCaCGCUUGCCg -3'
miRNA:   3'- -GUCCGCuGAGagagCCGcGCGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 31510 0.71 0.528909
Target:  5'- uCAGGCGGCUCcaggCUCGG-GCGgggaggGCCg -3'
miRNA:   3'- -GUCCGCUGAGa---GAGCCgCGCgaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 31590 0.73 0.401351
Target:  5'- gGGGCGagucuGCUCUCUggcgaggCGGCGCGCaucGCCc -3'
miRNA:   3'- gUCCGC-----UGAGAGA-------GCCGCGCGaa-CGG- -5'
24425 3' -58.8 NC_005264.1 + 31677 0.68 0.697236
Target:  5'- gAGGCagGGCUCUCggCGGgGCuGCccGCCa -3'
miRNA:   3'- gUCCG--CUGAGAGa-GCCgCG-CGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 33215 0.69 0.647596
Target:  5'- -uGGCGGCg--CUCGGCGUcuacucgagaaGCUUcGCCg -3'
miRNA:   3'- guCCGCUGagaGAGCCGCG-----------CGAA-CGG- -5'
24425 3' -58.8 NC_005264.1 + 34738 0.66 0.825888
Target:  5'- -uGGCG-UUCUUccCGGCGCGCcggucGCCg -3'
miRNA:   3'- guCCGCuGAGAGa-GCCGCGCGaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 36489 0.66 0.791532
Target:  5'- aAGGCGGCgUUUUCGuGCgaaGCGCgcgGCCu -3'
miRNA:   3'- gUCCGCUGaGAGAGC-CG---CGCGaa-CGG- -5'
24425 3' -58.8 NC_005264.1 + 37128 0.7 0.587712
Target:  5'- gAGGCGGCcgUCUCGGCcuCGCUgcuggcGCCa -3'
miRNA:   3'- gUCCGCUGagAGAGCCGc-GCGAa-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.