Results 1 - 20 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 98351 | 1.12 | 0.001135 |
Target: 5'- cCAGGCGACUCUCUCGGCGCGCUUGCCg -3' miRNA: 3'- -GUCCGCUGAGAGAGCCGCGCGAACGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 93244 | 0.77 | 0.264322 |
Target: 5'- cCGGGCGGCgccCUCgUCGGCGCGUUcGCg -3' miRNA: 3'- -GUCCGCUGa--GAG-AGCCGCGCGAaCGg -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 16485 | 0.75 | 0.346453 |
Target: 5'- gGGGCGACgagucacaugcgUCaUUCGGCGCGCacGCCg -3' miRNA: 3'- gUCCGCUG------------AGaGAGCCGCGCGaaCGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 150617 | 0.73 | 0.401351 |
Target: 5'- gGGGCGagucuGCUCUCUggcgaggCGGCGCGCaucGCCc -3' miRNA: 3'- gUCCGC-----UGAGAGA-------GCCGCGCGaa-CGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 31590 | 0.73 | 0.401351 |
Target: 5'- gGGGCGagucuGCUCUCUggcgaggCGGCGCGCaucGCCc -3' miRNA: 3'- gUCCGC-----UGAGAGA-------GCCGCGCGaa-CGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 124384 | 0.73 | 0.403023 |
Target: 5'- cCGGGCGGC-CUCgcggaugauucacacCGGCGCucgauuGCUUGCCa -3' miRNA: 3'- -GUCCGCUGaGAGa--------------GCCGCG------CGAACGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 5357 | 0.73 | 0.403023 |
Target: 5'- cCGGGCGGC-CUCgcggaugauucacacCGGCGCucgauuGCUUGCCa -3' miRNA: 3'- -GUCCGCUGaGAGa--------------GCCGCG------CGAACGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 126287 | 0.73 | 0.410601 |
Target: 5'- gAGGCGGCcaugccgCUUUCgGGCGCGCg-GCCg -3' miRNA: 3'- gUCCGCUGa------GAGAG-CCGCGCGaaCGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 125899 | 0.72 | 0.471495 |
Target: 5'- gCGGGCuugUUUCUCGGCGCGUguugcugUUGCCu -3' miRNA: 3'- -GUCCGcugAGAGAGCCGCGCG-------AACGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 6873 | 0.72 | 0.471495 |
Target: 5'- gCGGGCuugUUUCUCGGCGCGUguugcugUUGCCu -3' miRNA: 3'- -GUCCGcugAGAGAGCCGCGCG-------AACGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 31510 | 0.71 | 0.528909 |
Target: 5'- uCAGGCGGCUCcaggCUCGG-GCGgggaggGCCg -3' miRNA: 3'- -GUCCGCUGAGa---GAGCCgCGCgaa---CGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 150537 | 0.71 | 0.528909 |
Target: 5'- uCAGGCGGCUCcaggCUCGG-GCGgggaggGCCg -3' miRNA: 3'- -GUCCGCUGAGa---GAGCCgCGCgaa---CGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 136992 | 0.7 | 0.567924 |
Target: 5'- gAGGCGGCg-UUUUGGCGCGUUaUGCa -3' miRNA: 3'- gUCCGCUGagAGAGCCGCGCGA-ACGg -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 118934 | 0.7 | 0.574833 |
Target: 5'- gAGGCGACggccgcgcucaucgUCUC-CGGCGCccccUUUGCCg -3' miRNA: 3'- gUCCGCUG--------------AGAGaGCCGCGc---GAACGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 28027 | 0.7 | 0.577799 |
Target: 5'- gGGGCGGgaggUCUUcCGGCGCGCgcgacGCCg -3' miRNA: 3'- gUCCGCUg---AGAGaGCCGCGCGaa---CGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 37128 | 0.7 | 0.587712 |
Target: 5'- gAGGCGGCcgUCUCGGCcuCGCUgcuggcGCCa -3' miRNA: 3'- gUCCGCUGagAGAGCCGc-GCGAa-----CGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 85107 | 0.7 | 0.587712 |
Target: 5'- -cGGCGAgUCcCUCGGCGCauuGCgagacaaaUGCCa -3' miRNA: 3'- guCCGCUgAGaGAGCCGCG---CGa-------ACGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 18422 | 0.7 | 0.587712 |
Target: 5'- gCAGGCGcgccCUCUCgcUCGGCGCGgg-GUCg -3' miRNA: 3'- -GUCCGCu---GAGAG--AGCCGCGCgaaCGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 68122 | 0.7 | 0.587712 |
Target: 5'- aAGGCGcGCUCauaCUCGGCGgGgaUGUCg -3' miRNA: 3'- gUCCGC-UGAGa--GAGCCGCgCgaACGG- -5' |
|||||||
24425 | 3' | -58.8 | NC_005264.1 | + | 156155 | 0.7 | 0.587712 |
Target: 5'- gAGGCGGCcgUCUCGGCcuCGCUgcuggcGCCa -3' miRNA: 3'- gUCCGCUGagAGAGCCGc-GCGAa-----CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home