miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24425 3' -58.8 NC_005264.1 + 67728 0.68 0.726461
Target:  5'- gGGGCGGCUucggggcaaaggCUCUCagcgaaaucagGGCGuCGCUUaucGCCa -3'
miRNA:   3'- gUCCGCUGA------------GAGAG-----------CCGC-GCGAA---CGG- -5'
24425 3' -58.8 NC_005264.1 + 26711 0.69 0.637602
Target:  5'- -uGGUuuCUCUUugucuUCGGCGCGCUaacuUGCCc -3'
miRNA:   3'- guCCGcuGAGAG-----AGCCGCGCGA----ACGG- -5'
24425 3' -58.8 NC_005264.1 + 33215 0.69 0.647596
Target:  5'- -uGGCGGCg--CUCGGCGUcuacucgagaaGCUUcGCCg -3'
miRNA:   3'- guCCGCUGagaGAGCCGCG-----------CGAA-CGG- -5'
24425 3' -58.8 NC_005264.1 + 88816 0.69 0.647596
Target:  5'- uGGGCGugcagagauuCUCUCUCGGCGacCGCaUGUa -3'
miRNA:   3'- gUCCGCu---------GAGAGAGCCGC--GCGaACGg -5'
24425 3' -58.8 NC_005264.1 + 162670 0.69 0.653588
Target:  5'- -cGGCGGgUCguagguguacggUCGGCGCGCUgcgcGCCg -3'
miRNA:   3'- guCCGCUgAGag----------AGCCGCGCGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 128895 0.69 0.657579
Target:  5'- uCGGGCG-CggUCcCGGCGCGCcacgGCCu -3'
miRNA:   3'- -GUCCGCuGagAGaGCCGCGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 97677 0.68 0.677479
Target:  5'- -uGGCGcCUCgUUUCGGUGggaGCUUGCUg -3'
miRNA:   3'- guCCGCuGAG-AGAGCCGCg--CGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 150703 0.68 0.697236
Target:  5'- gAGGCagGGCUCUCggCGGgGCuGCccGCCa -3'
miRNA:   3'- gUCCG--CUGAGAGa-GCCgCG-CGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 62993 0.68 0.726461
Target:  5'- -uGGCgGACUC-CaaGGCGUGCUUGgCg -3'
miRNA:   3'- guCCG-CUGAGaGagCCGCGCGAACgG- -5'
24425 3' -58.8 NC_005264.1 + 85107 0.7 0.587712
Target:  5'- -cGGCGAgUCcCUCGGCGCauuGCgagacaaaUGCCa -3'
miRNA:   3'- guCCGCUgAGaGAGCCGCG---CGa-------ACGG- -5'
24425 3' -58.8 NC_005264.1 + 156155 0.7 0.587712
Target:  5'- gAGGCGGCcgUCUCGGCcuCGCUgcuggcGCCa -3'
miRNA:   3'- gUCCGCUGagAGAGCCGc-GCGAa-----CGG- -5'
24425 3' -58.8 NC_005264.1 + 68122 0.7 0.587712
Target:  5'- aAGGCGcGCUCauaCUCGGCGgGgaUGUCg -3'
miRNA:   3'- gUCCGC-UGAGa--GAGCCGCgCgaACGG- -5'
24425 3' -58.8 NC_005264.1 + 150617 0.73 0.401351
Target:  5'- gGGGCGagucuGCUCUCUggcgaggCGGCGCGCaucGCCc -3'
miRNA:   3'- gUCCGC-----UGAGAGA-------GCCGCGCGaa-CGG- -5'
24425 3' -58.8 NC_005264.1 + 124384 0.73 0.403023
Target:  5'- cCGGGCGGC-CUCgcggaugauucacacCGGCGCucgauuGCUUGCCa -3'
miRNA:   3'- -GUCCGCUGaGAGa--------------GCCGCG------CGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 125899 0.72 0.471495
Target:  5'- gCGGGCuugUUUCUCGGCGCGUguugcugUUGCCu -3'
miRNA:   3'- -GUCCGcugAGAGAGCCGCGCG-------AACGG- -5'
24425 3' -58.8 NC_005264.1 + 150537 0.71 0.528909
Target:  5'- uCAGGCGGCUCcaggCUCGG-GCGgggaggGCCg -3'
miRNA:   3'- -GUCCGCUGAGa---GAGCCgCGCgaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 136992 0.7 0.567924
Target:  5'- gAGGCGGCg-UUUUGGCGCGUUaUGCa -3'
miRNA:   3'- gUCCGCUGagAGAGCCGCGCGA-ACGg -5'
24425 3' -58.8 NC_005264.1 + 118934 0.7 0.574833
Target:  5'- gAGGCGACggccgcgcucaucgUCUC-CGGCGCccccUUUGCCg -3'
miRNA:   3'- gUCCGCUG--------------AGAGaGCCGCGc---GAACGG- -5'
24425 3' -58.8 NC_005264.1 + 28027 0.7 0.577799
Target:  5'- gGGGCGGgaggUCUUcCGGCGCGCgcgacGCCg -3'
miRNA:   3'- gUCCGCUg---AGAGaGCCGCGCGaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 18422 0.7 0.587712
Target:  5'- gCAGGCGcgccCUCUCgcUCGGCGCGgg-GUCg -3'
miRNA:   3'- -GUCCGCu---GAGAG--AGCCGCGCgaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.