miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24425 3' -58.8 NC_005264.1 + 162670 0.69 0.653588
Target:  5'- -cGGCGGgUCguagguguacggUCGGCGCGCUgcgcGCCg -3'
miRNA:   3'- guCCGCUgAGag----------AGCCGCGCGAa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 159511 0.66 0.790643
Target:  5'- uGGcGCGACUaCUCUcgcuccgcuugcaCGGCGCGCgaucCCg -3'
miRNA:   3'- gUC-CGCUGA-GAGA-------------GCCGCGCGaac-GG- -5'
24425 3' -58.8 NC_005264.1 + 157252 0.69 0.647596
Target:  5'- -uGGCGGC-C-CUCGGCGCGUUggaggugGUCu -3'
miRNA:   3'- guCCGCUGaGaGAGCCGCGCGAa------CGG- -5'
24425 3' -58.8 NC_005264.1 + 156155 0.7 0.587712
Target:  5'- gAGGCGGCcgUCUCGGCcuCGCUgcuggcGCCa -3'
miRNA:   3'- gUCCGCUGagAGAGCCGc-GCGAa-----CGG- -5'
24425 3' -58.8 NC_005264.1 + 150703 0.68 0.697236
Target:  5'- gAGGCagGGCUCUCggCGGgGCuGCccGCCa -3'
miRNA:   3'- gUCCG--CUGAGAGa-GCCgCG-CGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 150617 0.73 0.401351
Target:  5'- gGGGCGagucuGCUCUCUggcgaggCGGCGCGCaucGCCc -3'
miRNA:   3'- gUCCGC-----UGAGAGA-------GCCGCGCGaa-CGG- -5'
24425 3' -58.8 NC_005264.1 + 150537 0.71 0.528909
Target:  5'- uCAGGCGGCUCcaggCUCGG-GCGgggaggGCCg -3'
miRNA:   3'- -GUCCGCUGAGa---GAGCCgCGCgaa---CGG- -5'
24425 3' -58.8 NC_005264.1 + 146314 0.66 0.823398
Target:  5'- gCAaGCG-CUaagagcuauccugaCUCUCGGCGUGCgcGCCg -3'
miRNA:   3'- -GUcCGCuGA--------------GAGAGCCGCGCGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 144366 0.66 0.800347
Target:  5'- uGGGCGGaguCUCUCUUGGCGaggGacgUGCUc -3'
miRNA:   3'- gUCCGCU---GAGAGAGCCGCg--Cga-ACGG- -5'
24425 3' -58.8 NC_005264.1 + 136992 0.7 0.567924
Target:  5'- gAGGCGGCg-UUUUGGCGCGUUaUGCa -3'
miRNA:   3'- gUCCGCUGagAGAGCCGCGCGA-ACGg -5'
24425 3' -58.8 NC_005264.1 + 136764 0.66 0.825888
Target:  5'- gAGGCGAagaccagcccagUgagucCUUUCGGCGCGUg-GCCg -3'
miRNA:   3'- gUCCGCU------------Ga----GAGAGCCGCGCGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 136706 0.68 0.704106
Target:  5'- uGGGCucgccAUUCUCUCGGCccgcgccacgagccGCGCggugGCCa -3'
miRNA:   3'- gUCCGc----UGAGAGAGCCG--------------CGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 132433 0.66 0.791532
Target:  5'- --cGCaGCUCUCcgcacCGGCGCGCgaccGCCg -3'
miRNA:   3'- gucCGcUGAGAGa----GCCGCGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 128895 0.69 0.657579
Target:  5'- uCGGGCG-CggUCcCGGCGCGCcacgGCCu -3'
miRNA:   3'- -GUCCGCuGagAGaGCCGCGCGaa--CGG- -5'
24425 3' -58.8 NC_005264.1 + 126287 0.73 0.410601
Target:  5'- gAGGCGGCcaugccgCUUUCgGGCGCGCg-GCCg -3'
miRNA:   3'- gUCCGCUGa------GAGAG-CCGCGCGaaCGG- -5'
24425 3' -58.8 NC_005264.1 + 125899 0.72 0.471495
Target:  5'- gCGGGCuugUUUCUCGGCGCGUguugcugUUGCCu -3'
miRNA:   3'- -GUCCGcugAGAGAGCCGCGCG-------AACGG- -5'
24425 3' -58.8 NC_005264.1 + 125261 0.68 0.706063
Target:  5'- uCGGcGCGACUUguUCUucgcccuccgcggCGGCGCGCU-GUCg -3'
miRNA:   3'- -GUC-CGCUGAG--AGA-------------GCCGCGCGAaCGG- -5'
24425 3' -58.8 NC_005264.1 + 124440 0.66 0.809016
Target:  5'- aGGGCGuacgcggcauCUgUCUCGGCGuCGCcgcucucGCCg -3'
miRNA:   3'- gUCCGCu---------GAgAGAGCCGC-GCGaa-----CGG- -5'
24425 3' -58.8 NC_005264.1 + 124384 0.73 0.403023
Target:  5'- cCGGGCGGC-CUCgcggaugauucacacCGGCGCucgauuGCUUGCCa -3'
miRNA:   3'- -GUCCGCUGaGAGa--------------GCCGCG------CGAACGG- -5'
24425 3' -58.8 NC_005264.1 + 119760 0.67 0.764299
Target:  5'- aAGGCGGCUCUggUCGGCGUagacgaauuCUUGaCCg -3'
miRNA:   3'- gUCCGCUGAGAg-AGCCGCGc--------GAAC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.