miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 143298 0.67 0.945888
Target:  5'- --aCCUCGcUccGGCAaCGUUGGCGGCg -3'
miRNA:   3'- cccGGAGU-AuaCCGUcGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 31934 0.67 0.941279
Target:  5'- cGGCCUCGcggcucGGCucugAGCucgcgagUGGCGGCg -3'
miRNA:   3'- cCCGGAGUaua---CCG----UCGua-----AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 25196 0.67 0.941279
Target:  5'- aGGGCCgCGUAcguguUGGC-GCAcacGGUGGCc -3'
miRNA:   3'- -CCCGGaGUAU-----ACCGuCGUaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 77401 0.67 0.941279
Target:  5'- aGGGCCggcccgCAUAUGGaUAGCGacgacgugagGGUGGUu -3'
miRNA:   3'- -CCCGGa-----GUAUACC-GUCGUaa--------UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 82457 0.67 0.941279
Target:  5'- gGGGCCUCGUugGGUAcgucgauauuguGCuuc-GCGGCg -3'
miRNA:   3'- -CCCGGAGUAuaCCGU------------CGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 4335 0.67 0.936423
Target:  5'- aGGCCUgccccUGGCGGCug-AGCGcGCg -3'
miRNA:   3'- cCCGGAguau-ACCGUCGuaaUCGC-CG- -5'
24452 5' -53.3 NC_005264.1 + 97267 0.67 0.936423
Target:  5'- cGGGCCU----UGGCA-CggUAGUGGCc -3'
miRNA:   3'- -CCCGGAguauACCGUcGuaAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 123362 0.67 0.936423
Target:  5'- aGGCCUgccccUGGCGGCug-AGCGcGCg -3'
miRNA:   3'- cCCGGAguau-ACCGUCGuaaUCGC-CG- -5'
24452 5' -53.3 NC_005264.1 + 27637 0.68 0.931319
Target:  5'- uGGGUCUCAgccaGGaucGCcgauUUGGCGGCg -3'
miRNA:   3'- -CCCGGAGUaua-CCgu-CGu---AAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 112310 0.68 0.931319
Target:  5'- aGGCCUCu--UGGCAGCGcagAGacaucgaccaaGGCa -3'
miRNA:   3'- cCCGGAGuauACCGUCGUaa-UCg----------CCG- -5'
24452 5' -53.3 NC_005264.1 + 116955 0.68 0.931319
Target:  5'- -aGCCgcCcgAUGGUgucgcuuGCAUUGGCGGCg -3'
miRNA:   3'- ccCGGa-GuaUACCGu------CGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 84495 0.68 0.931319
Target:  5'- uGGGCCUUAcUAUGGagaAGCuguu-CGGCg -3'
miRNA:   3'- -CCCGGAGU-AUACCg--UCGuaaucGCCG- -5'
24452 5' -53.3 NC_005264.1 + 140225 0.68 0.925965
Target:  5'- cGGGCCaagacuUGGCGGCGa-GGCGuGCa -3'
miRNA:   3'- -CCCGGaguau-ACCGUCGUaaUCGC-CG- -5'
24452 5' -53.3 NC_005264.1 + 73788 0.68 0.925965
Target:  5'- aGGCCUCuuggaagAUGGC-GCAggGGuCGGUu -3'
miRNA:   3'- cCCGGAGua-----UACCGuCGUaaUC-GCCG- -5'
24452 5' -53.3 NC_005264.1 + 146922 0.68 0.920362
Target:  5'- uGGGCUaUCGg--GGCAGUAguucGUGGCg -3'
miRNA:   3'- -CCCGG-AGUauaCCGUCGUaau-CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 38336 0.68 0.914509
Target:  5'- cGGGCCcuggcCGUGaugcugGGCGGCgg-GGCGGUu -3'
miRNA:   3'- -CCCGGa----GUAUa-----CCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 157363 0.68 0.914509
Target:  5'- cGGGCCcuggcCGUGaugcugGGCGGCgg-GGCGGUu -3'
miRNA:   3'- -CCCGGa----GUAUa-----CCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 17352 0.68 0.908409
Target:  5'- -uGCCUUccgcGGCAGC--UGGCGGCg -3'
miRNA:   3'- ccCGGAGuauaCCGUCGuaAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 44605 0.68 0.908409
Target:  5'- aGGGuCCUUGUuccugGUGGCGGaCAUcaccGCGGCc -3'
miRNA:   3'- -CCC-GGAGUA-----UACCGUC-GUAau--CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 81004 0.68 0.908409
Target:  5'- uGGCCUCcgccuugGUGGUcgaAGCc--AGCGGCg -3'
miRNA:   3'- cCCGGAGua-----UACCG---UCGuaaUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.