miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 4837 0.66 0.962618
Target:  5'- cGGGCCUCuguuucuagGGCguuagaguuauccuuAGagcUUGGCGGCa -3'
miRNA:   3'- -CCCGGAGuaua-----CCG---------------UCgu-AAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 57471 0.66 0.961915
Target:  5'- -cGCCUguUuuccUGGCGGC---GGCGGCg -3'
miRNA:   3'- ccCGGAguAu---ACCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 141957 0.66 0.96156
Target:  5'- aGGCCUCAUGUuuaacggaaacagGGCAuGgAgUAGCaGGCu -3'
miRNA:   3'- cCCGGAGUAUA-------------CCGU-CgUaAUCG-CCG- -5'
24452 5' -53.3 NC_005264.1 + 3465 0.66 0.960843
Target:  5'- aGGGUCUCGgg-GGCGaugggcuugccgccGCAc--GCGGCg -3'
miRNA:   3'- -CCCGGAGUauaCCGU--------------CGUaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 122492 0.66 0.960843
Target:  5'- aGGGUCUCGgg-GGCGaugggcuugccgccGCAc--GCGGCg -3'
miRNA:   3'- -CCCGGAGUauaCCGU--------------CGUaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 56906 0.66 0.958262
Target:  5'- uGGGCgagcaUUAUggGGCGGCGUacgUGcGUGGCg -3'
miRNA:   3'- -CCCGg----AGUAuaCCGUCGUA---AU-CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 3663 0.66 0.958262
Target:  5'- -cGUCUCGacgaugGGCGGCcgUcucGGCGGCg -3'
miRNA:   3'- ccCGGAGUaua---CCGUCGuaA---UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 98760 0.66 0.958262
Target:  5'- uGGCC-CGgaaGGCGGCucugcuGCGGCu -3'
miRNA:   3'- cCCGGaGUauaCCGUCGuaau--CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 148493 0.66 0.958262
Target:  5'- uGGGacgCGc-UGGUcGCGUUGGCGGCg -3'
miRNA:   3'- -CCCggaGUauACCGuCGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 122690 0.66 0.958262
Target:  5'- -cGUCUCGacgaugGGCGGCcgUcucGGCGGCg -3'
miRNA:   3'- ccCGGAGUaua---CCGUCGuaA---UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 42297 0.66 0.958262
Target:  5'- gGGGCCcCAaaaaacGGC-GCAgccAGCGGCg -3'
miRNA:   3'- -CCCGGaGUaua---CCGuCGUaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 161324 0.66 0.958262
Target:  5'- gGGGCCcCAaaaaacGGC-GCAgccAGCGGCg -3'
miRNA:   3'- -CCCGGaGUaua---CCGuCGUaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 12259 0.66 0.957121
Target:  5'- cGGGCCgUCccugagAUGacgaugccguacccUGGCGGCAg-GGCGGUg -3'
miRNA:   3'- -CCCGG-AG------UAU--------------ACCGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 81881 0.67 0.950253
Target:  5'- uGGUCg---AUGGC-GCcUUGGCGGCg -3'
miRNA:   3'- cCCGGaguaUACCGuCGuAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 47569 0.67 0.949827
Target:  5'- aGGCCUCGUgccagauAUGGCucgcggggacGCGUUGGgGGa -3'
miRNA:   3'- cCCGGAGUA-------UACCGu---------CGUAAUCgCCg -5'
24452 5' -53.3 NC_005264.1 + 82182 0.67 0.948969
Target:  5'- cGGCCggUCGgc-GGCGGCcaucguauuagacggUAGCGGCg -3'
miRNA:   3'- cCCGG--AGUauaCCGUCGua-------------AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 145998 0.67 0.945888
Target:  5'- aGGGCCUC-UAcGGCGugcGCGUUaugGGCucgGGCg -3'
miRNA:   3'- -CCCGGAGuAUaCCGU---CGUAA---UCG---CCG- -5'
24452 5' -53.3 NC_005264.1 + 72382 0.67 0.945888
Target:  5'- cGGGUUUCAUGUGGaaCAGCucucccAGuCGGUg -3'
miRNA:   3'- -CCCGGAGUAUACC--GUCGuaa---UC-GCCG- -5'
24452 5' -53.3 NC_005264.1 + 41638 0.67 0.945888
Target:  5'- uGGCCagAUGcGGCAGC----GCGGCc -3'
miRNA:   3'- cCCGGagUAUaCCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 143298 0.67 0.945888
Target:  5'- --aCCUCGcUccGGCAaCGUUGGCGGCg -3'
miRNA:   3'- cccGGAGU-AuaCCGUcGUAAUCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.