miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 104054 0.71 0.81723
Target:  5'- cGGCCUCAggggGGCGGUcgacgAUUA-CGGCg -3'
miRNA:   3'- cCCGGAGUaua-CCGUCG-----UAAUcGCCG- -5'
24452 5' -53.3 NC_005264.1 + 125106 0.7 0.834528
Target:  5'- aGGUCUUu--UGGCucGCGUcgUAGCGGCg -3'
miRNA:   3'- cCCGGAGuauACCGu-CGUA--AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 86203 0.7 0.834528
Target:  5'- cGGCCUCG-AUGGUcuucucuGCGUgcucgugGGCGGCc -3'
miRNA:   3'- cCCGGAGUaUACCGu------CGUAa------UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 6079 0.7 0.834528
Target:  5'- aGGUCUUu--UGGCucGCGUcgUAGCGGCg -3'
miRNA:   3'- cCCGGAGuauACCGu-CGUA--AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 72472 0.7 0.834528
Target:  5'- cGGUCggaUCGUGUaccGGCAGCGUcGGCGGg -3'
miRNA:   3'- cCCGG---AGUAUA---CCGUCGUAaUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 14427 0.7 0.846182
Target:  5'- -cGCC-CGUAUGGCGGCcugcccuccccaauaGgcaUGGCGGCa -3'
miRNA:   3'- ccCGGaGUAUACCGUCG---------------Ua--AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 48394 0.7 0.851057
Target:  5'- gGGGCgUCGggcGGCGGCcAggAGCGGg -3'
miRNA:   3'- -CCCGgAGUauaCCGUCG-UaaUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 87633 0.7 0.859014
Target:  5'- aGGGCCgaugcagccgCGUggGGC-GCGggaccUGGCGGCa -3'
miRNA:   3'- -CCCGGa---------GUAuaCCGuCGUa----AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 146618 0.69 0.866757
Target:  5'- gGGGgCUCAgagGGUAGC----GCGGCg -3'
miRNA:   3'- -CCCgGAGUauaCCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 104897 0.69 0.874281
Target:  5'- aGGCCUCAggccgaacaGGCgccauAGCGggAGUGGCa -3'
miRNA:   3'- cCCGGAGUaua------CCG-----UCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 58695 0.69 0.881578
Target:  5'- cGGCCUCuaugacGGCcGCGUUuacuaggcgGGCGGCc -3'
miRNA:   3'- cCCGGAGuaua--CCGuCGUAA---------UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 35811 0.69 0.888643
Target:  5'- gGGcGCCUCugccGGCcccGCAaUGGCGGCc -3'
miRNA:   3'- -CC-CGGAGuauaCCGu--CGUaAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 13697 0.69 0.888643
Target:  5'- uGGCC-CAgggagaacUGGCAGCucguGCGGCu -3'
miRNA:   3'- cCCGGaGUau------ACCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 151888 0.69 0.888643
Target:  5'- cGGGCaucagcugUAUGUGGCGGaggggacGGCGGCu -3'
miRNA:   3'- -CCCGga------GUAUACCGUCguaa---UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 9529 0.69 0.888643
Target:  5'- uGGCCUCAcucguugccuuUGUcgcucGCAGCcggUGGCGGCu -3'
miRNA:   3'- cCCGGAGU-----------AUAc----CGUCGua-AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 154837 0.69 0.888643
Target:  5'- gGGcGCCUCugccGGCcccGCAaUGGCGGCc -3'
miRNA:   3'- -CC-CGGAGuauaCCGu--CGUaAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 61421 0.69 0.894126
Target:  5'- cGGGUCUCGUAUgcuuucGGCGGCccgcuccuCGGCg -3'
miRNA:   3'- -CCCGGAGUAUA------CCGUCGuaauc---GCCG- -5'
24452 5' -53.3 NC_005264.1 + 110199 0.69 0.902062
Target:  5'- -uGCCUCAUccuaaCGGCAggGGCGGCa -3'
miRNA:   3'- ccCGGAGUAuacc-GUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 37426 0.69 0.902062
Target:  5'- uGGCCgug---GaGCAGCAcgAGCGGCu -3'
miRNA:   3'- cCCGGaguauaC-CGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 156453 0.69 0.902062
Target:  5'- uGGCCgug---GaGCAGCAcgAGCGGCu -3'
miRNA:   3'- cCCGGaguauaC-CGUCGUaaUCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.