miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 74278 1.15 0.002072
Target:  5'- gGGGCCUCAUAUGGCAGCAUUAGCGGCg -3'
miRNA:   3'- -CCCGGAGUAUACCGUCGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 137263 0.76 0.505434
Target:  5'- cGGCCagcUGUGUGGUugcgauuccgcGGCGUUGGCGGCg -3'
miRNA:   3'- cCCGGa--GUAUACCG-----------UCGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 156164 0.76 0.545638
Target:  5'- aGGGCg-CAUAUGcGCGGCuuugcggcgUGGCGGCg -3'
miRNA:   3'- -CCCGgaGUAUAC-CGUCGua-------AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 98523 0.75 0.559959
Target:  5'- gGGGCCUCAgucuUGGCAGCGgcaacgcgcugugGGCcGCg -3'
miRNA:   3'- -CCCGGAGUau--ACCGUCGUaa-----------UCGcCG- -5'
24452 5' -53.3 NC_005264.1 + 128918 0.75 0.56613
Target:  5'- cGGCCUuccCAgcccUGGCGGCAgaaaGGCGGCg -3'
miRNA:   3'- cCCGGA---GUau--ACCGUCGUaa--UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 9892 0.75 0.56613
Target:  5'- cGGCCUuccCAgcccUGGCGGCAgaaaGGCGGCg -3'
miRNA:   3'- cCCGGA---GUau--ACCGUCGUaa--UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 72677 0.75 0.607635
Target:  5'- -aGCCUCAaccUGGCGGCGUUcgugacGCGGCg -3'
miRNA:   3'- ccCGGAGUau-ACCGUCGUAAu-----CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 4282 0.74 0.628533
Target:  5'- cGGCCUgCAUGgcUGGcCAGUAagAGCGGCc -3'
miRNA:   3'- cCCGGA-GUAU--ACC-GUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 68465 0.74 0.628533
Target:  5'- aGGGCCUCcacuaAUAuUGGCcaGGCGgcugUAGCGGUc -3'
miRNA:   3'- -CCCGGAG-----UAU-ACCG--UCGUa---AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 136234 0.74 0.643171
Target:  5'- aGGGCCgag-GUGGCGacggacacggcucauGgGUUAGCGGCg -3'
miRNA:   3'- -CCCGGaguaUACCGU---------------CgUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 94797 0.74 0.659878
Target:  5'- -cGCCUCGUcgGGCAGgA--AGCGGUu -3'
miRNA:   3'- ccCGGAGUAuaCCGUCgUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 103708 0.73 0.71153
Target:  5'- aGGGCCaguggagCGgcgGcGCGGCAUcAGCGGCg -3'
miRNA:   3'- -CCCGGa------GUauaC-CGUCGUAaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 100075 0.73 0.71153
Target:  5'- gGGGCCUag---GGCguAGCA-UGGCGGCc -3'
miRNA:   3'- -CCCGGAguauaCCG--UCGUaAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 21746 0.73 0.715602
Target:  5'- gGGGCCUUcgGcGGCGGCcgucuugagcgccguAacuUUGGCGGCa -3'
miRNA:   3'- -CCCGGAGuaUaCCGUCG---------------U---AAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 123106 0.72 0.721687
Target:  5'- gGGGCUguugCAcg-GGCGGCGUc-GCGGCa -3'
miRNA:   3'- -CCCGGa---GUauaCCGUCGUAauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 4079 0.72 0.721687
Target:  5'- gGGGCUguugCAcg-GGCGGCGUc-GCGGCa -3'
miRNA:   3'- -CCCGGa---GUauaCCGUCGUAauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 42223 0.72 0.741751
Target:  5'- cGGGUUUCcgA-GGCGGCuaaacAGCGGCa -3'
miRNA:   3'- -CCCGGAGuaUaCCGUCGuaa--UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 55170 0.72 0.761415
Target:  5'- cGGCCUCugg-GcGCGGCugaaGGCGGCg -3'
miRNA:   3'- cCCGGAGuauaC-CGUCGuaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 29121 0.71 0.780601
Target:  5'- aGGGCUgUCGUGccagaGGCAGCAccagUGcGCGGCg -3'
miRNA:   3'- -CCCGG-AGUAUa----CCGUCGUa---AU-CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 77200 0.71 0.808314
Target:  5'- cGGGCCaUC-----GCGGcCAUUAGCGGCu -3'
miRNA:   3'- -CCCGG-AGuauacCGUC-GUAAUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.