miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 1583 0.66 0.974305
Target:  5'- aGGGaCCUCucgGUGG-GGCAaUGGUGGa -3'
miRNA:   3'- -CCC-GGAGua-UACCgUCGUaAUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 1667 0.66 0.974305
Target:  5'- uGGGCgaCGguggGGCaaAGUAUUggGGCGGCc -3'
miRNA:   3'- -CCCGgaGUaua-CCG--UCGUAA--UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 2503 0.66 0.967919
Target:  5'- cGGGCCUCGcgcgacuuCAGCGcgGGgGGCg -3'
miRNA:   3'- -CCCGGAGUauacc---GUCGUaaUCgCCG- -5'
24452 5' -53.3 NC_005264.1 + 2673 0.69 0.902062
Target:  5'- uGGCCcCGaccgcgagGGCAGCGU-GGUGGCg -3'
miRNA:   3'- cCCGGaGUaua-----CCGUCGUAaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 3465 0.66 0.960843
Target:  5'- aGGGUCUCGgg-GGCGaugggcuugccgccGCAc--GCGGCg -3'
miRNA:   3'- -CCCGGAGUauaCCGU--------------CGUaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 3663 0.66 0.958262
Target:  5'- -cGUCUCGacgaugGGCGGCcgUcucGGCGGCg -3'
miRNA:   3'- ccCGGAGUaua---CCGUCGuaA---UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 4079 0.72 0.721687
Target:  5'- gGGGCUguugCAcg-GGCGGCGUc-GCGGCa -3'
miRNA:   3'- -CCCGGa---GUauaCCGUCGUAauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 4282 0.74 0.628533
Target:  5'- cGGCCUgCAUGgcUGGcCAGUAagAGCGGCc -3'
miRNA:   3'- cCCGGA-GUAU--ACC-GUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 4335 0.67 0.936423
Target:  5'- aGGCCUgccccUGGCGGCug-AGCGcGCg -3'
miRNA:   3'- cCCGGAguau-ACCGUCGuaaUCGC-CG- -5'
24452 5' -53.3 NC_005264.1 + 4837 0.66 0.962618
Target:  5'- cGGGCCUCuguuucuagGGCguuagaguuauccuuAGagcUUGGCGGCa -3'
miRNA:   3'- -CCCGGAGuaua-----CCG---------------UCgu-AAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 6079 0.7 0.834528
Target:  5'- aGGUCUUu--UGGCucGCGUcgUAGCGGCg -3'
miRNA:   3'- cCCGGAGuauACCGu-CGUA--AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 7080 0.66 0.971529
Target:  5'- gGGGaacaC-CAggaAUGGUAGCA--GGCGGCc -3'
miRNA:   3'- -CCCg---GaGUa--UACCGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 8071 0.66 0.96534
Target:  5'- cGGCCgcaGUcgGGCA-CG--GGCGGCg -3'
miRNA:   3'- cCCGGag-UAuaCCGUcGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 9529 0.69 0.888643
Target:  5'- uGGCCUCAcucguugccuuUGUcgcucGCAGCcggUGGCGGCu -3'
miRNA:   3'- cCCGGAGU-----------AUAc----CGUCGua-AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 9892 0.75 0.56613
Target:  5'- cGGCCUuccCAgcccUGGCGGCAgaaaGGCGGCg -3'
miRNA:   3'- cCCGGA---GUau--ACCGUCGUaa--UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 10220 0.66 0.968542
Target:  5'- cGGCCUCGc-UGGCcucgGGCucaaUAGCGGg -3'
miRNA:   3'- cCCGGAGUauACCG----UCGua--AUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 12259 0.66 0.957121
Target:  5'- cGGGCCgUCccugagAUGacgaugccguacccUGGCGGCAg-GGCGGUg -3'
miRNA:   3'- -CCCGG-AG------UAU--------------ACCGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 13697 0.69 0.888643
Target:  5'- uGGCC-CAgggagaacUGGCAGCucguGCGGCu -3'
miRNA:   3'- cCCGGaGUau------ACCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 14427 0.7 0.846182
Target:  5'- -cGCC-CGUAUGGCGGCcugcccuccccaauaGgcaUGGCGGCa -3'
miRNA:   3'- ccCGGaGUAUACCGUCG---------------Ua--AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 17352 0.68 0.908409
Target:  5'- -uGCCUUccgcGGCAGC--UGGCGGCg -3'
miRNA:   3'- ccCGGAGuauaCCGUCGuaAUCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.