miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 19878 0.68 0.908409
Target:  5'- cGGCCUUAUGcaccGCaAGUAUUcGCGGCg -3'
miRNA:   3'- cCCGGAGUAUac--CG-UCGUAAuCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 21746 0.73 0.715602
Target:  5'- gGGGCCUUcgGcGGCGGCcgucuugagcgccguAacuUUGGCGGCa -3'
miRNA:   3'- -CCCGGAGuaUaCCGUCG---------------U---AAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 22231 0.67 0.945888
Target:  5'- -cGCCUCGUc-GGCGGUcugGGCGGUc -3'
miRNA:   3'- ccCGGAGUAuaCCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 25196 0.67 0.941279
Target:  5'- aGGGCCgCGUAcguguUGGC-GCAcacGGUGGCc -3'
miRNA:   3'- -CCCGGaGUAU-----ACCGuCGUaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 27637 0.68 0.931319
Target:  5'- uGGGUCUCAgccaGGaucGCcgauUUGGCGGCg -3'
miRNA:   3'- -CCCGGAGUaua-CCgu-CGu---AAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 29121 0.71 0.780601
Target:  5'- aGGGCUgUCGUGccagaGGCAGCAccagUGcGCGGCg -3'
miRNA:   3'- -CCCGG-AGUAUa----CCGUCGUa---AU-CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 31934 0.67 0.941279
Target:  5'- cGGCCUCGcggcucGGCucugAGCucgcgagUGGCGGCg -3'
miRNA:   3'- cCCGGAGUaua---CCG----UCGua-----AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 35811 0.69 0.888643
Target:  5'- gGGcGCCUCugccGGCcccGCAaUGGCGGCc -3'
miRNA:   3'- -CC-CGGAGuauaCCGu--CGUaAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 37426 0.69 0.902062
Target:  5'- uGGCCgug---GaGCAGCAcgAGCGGCu -3'
miRNA:   3'- cCCGGaguauaC-CGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 38336 0.68 0.914509
Target:  5'- cGGGCCcuggcCGUGaugcugGGCGGCgg-GGCGGUu -3'
miRNA:   3'- -CCCGGa----GUAUa-----CCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 41638 0.67 0.945888
Target:  5'- uGGCCagAUGcGGCAGC----GCGGCc -3'
miRNA:   3'- cCCGGagUAUaCCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 42223 0.72 0.741751
Target:  5'- cGGGUUUCcgA-GGCGGCuaaacAGCGGCa -3'
miRNA:   3'- -CCCGGAGuaUaCCGUCGuaa--UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 42297 0.66 0.958262
Target:  5'- gGGGCCcCAaaaaacGGC-GCAgccAGCGGCg -3'
miRNA:   3'- -CCCGGaGUaua---CCGuCGUaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 44605 0.68 0.908409
Target:  5'- aGGGuCCUUGUuccugGUGGCGGaCAUcaccGCGGCc -3'
miRNA:   3'- -CCC-GGAGUA-----UACCGUC-GUAau--CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 47569 0.67 0.949827
Target:  5'- aGGCCUCGUgccagauAUGGCucgcggggacGCGUUGGgGGa -3'
miRNA:   3'- cCCGGAGUA-------UACCGu---------CGUAAUCgCCg -5'
24452 5' -53.3 NC_005264.1 + 48394 0.7 0.851057
Target:  5'- gGGGCgUCGggcGGCGGCcAggAGCGGg -3'
miRNA:   3'- -CCCGgAGUauaCCGUCG-UaaUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 55170 0.72 0.761415
Target:  5'- cGGCCUCugg-GcGCGGCugaaGGCGGCg -3'
miRNA:   3'- cCCGGAGuauaC-CGUCGuaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 56906 0.66 0.958262
Target:  5'- uGGGCgagcaUUAUggGGCGGCGUacgUGcGUGGCg -3'
miRNA:   3'- -CCCGg----AGUAuaCCGUCGUA---AU-CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 57471 0.66 0.961915
Target:  5'- -cGCCUguUuuccUGGCGGC---GGCGGCg -3'
miRNA:   3'- ccCGGAguAu---ACCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 58695 0.69 0.881578
Target:  5'- cGGCCUCuaugacGGCcGCGUUuacuaggcgGGCGGCc -3'
miRNA:   3'- cCCGGAGuaua--CCGuCGUAA---------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.