Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24452 | 5' | -53.3 | NC_005264.1 | + | 155123 | 0.66 | 0.974305 |
Target: 5'- uGGCC----AUGcGCAGCGUUAGggaGGCg -3' miRNA: 3'- cCCGGaguaUAC-CGUCGUAAUCg--CCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 96732 | 0.66 | 0.974305 |
Target: 5'- gGGGUCUCAgac-GCGGCugauccuucgUAGCGuGCa -3' miRNA: 3'- -CCCGGAGUauacCGUCGua--------AUCGC-CG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 1667 | 0.66 | 0.974305 |
Target: 5'- uGGGCgaCGguggGGCaaAGUAUUggGGCGGCc -3' miRNA: 3'- -CCCGgaGUaua-CCG--UCGUAA--UCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 1583 | 0.66 | 0.974305 |
Target: 5'- aGGGaCCUCucgGUGG-GGCAaUGGUGGa -3' miRNA: 3'- -CCC-GGAGua-UACCgUCGUaAUCGCCg -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 116794 | 0.66 | 0.971529 |
Target: 5'- uGGCUUCcgGgGGagAGCAUU-GCGGCu -3' miRNA: 3'- cCCGGAGuaUaCCg-UCGUAAuCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 82359 | 0.66 | 0.971529 |
Target: 5'- cGGCCU----UGGCGGCGa-AGCGGa -3' miRNA: 3'- cCCGGAguauACCGUCGUaaUCGCCg -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 60835 | 0.66 | 0.971529 |
Target: 5'- -cGCUUCAgcuUGGCGucggcgucggcGCGUgcGCGGCa -3' miRNA: 3'- ccCGGAGUau-ACCGU-----------CGUAauCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 131648 | 0.66 | 0.966647 |
Target: 5'- -cGCCUCGgucuGCGGUgcccgccgccagaccGUUGGCGGCa -3' miRNA: 3'- ccCGGAGUauacCGUCG---------------UAAUCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 8071 | 0.66 | 0.96534 |
Target: 5'- cGGCCgcaGUcgGGCA-CG--GGCGGCg -3' miRNA: 3'- cCCGGag-UAuaCCGUcGUaaUCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 116409 | 0.66 | 0.96534 |
Target: 5'- aGGCCgacgucgagcgCAg--GGCGGCGUgcagccucGCGGCg -3' miRNA: 3'- cCCGGa----------GUauaCCGUCGUAau------CGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 98760 | 0.66 | 0.958262 |
Target: 5'- uGGCC-CGgaaGGCGGCucugcuGCGGCu -3' miRNA: 3'- cCCGGaGUauaCCGUCGuaau--CGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 3465 | 0.66 | 0.960843 |
Target: 5'- aGGGUCUCGgg-GGCGaugggcuugccgccGCAc--GCGGCg -3' miRNA: 3'- -CCCGGAGUauaCCGU--------------CGUaauCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 7080 | 0.66 | 0.971529 |
Target: 5'- gGGGaacaC-CAggaAUGGUAGCA--GGCGGCc -3' miRNA: 3'- -CCCg---GaGUa--UACCGUCGUaaUCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 123362 | 0.67 | 0.936423 |
Target: 5'- aGGCCUgccccUGGCGGCug-AGCGcGCg -3' miRNA: 3'- cCCGGAguau-ACCGUCGuaaUCGC-CG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 82457 | 0.67 | 0.941279 |
Target: 5'- gGGGCCUCGUugGGUAcgucgauauuguGCuuc-GCGGCg -3' miRNA: 3'- -CCCGGAGUAuaCCGU------------CGuaauCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 82182 | 0.67 | 0.948969 |
Target: 5'- cGGCCggUCGgc-GGCGGCcaucguauuagacggUAGCGGCg -3' miRNA: 3'- cCCGG--AGUauaCCGUCGua-------------AUCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 145998 | 0.67 | 0.945888 |
Target: 5'- aGGGCCUC-UAcGGCGugcGCGUUaugGGCucgGGCg -3' miRNA: 3'- -CCCGGAGuAUaCCGU---CGUAA---UCG---CCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 81881 | 0.67 | 0.950253 |
Target: 5'- uGGUCg---AUGGC-GCcUUGGCGGCg -3' miRNA: 3'- cCCGGaguaUACCGuCGuAAUCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 41638 | 0.67 | 0.945888 |
Target: 5'- uGGCCagAUGcGGCAGC----GCGGCc -3' miRNA: 3'- cCCGGagUAUaCCGUCGuaauCGCCG- -5' |
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24452 | 5' | -53.3 | NC_005264.1 | + | 47569 | 0.67 | 0.949827 |
Target: 5'- aGGCCUCGUgccagauAUGGCucgcggggacGCGUUGGgGGa -3' miRNA: 3'- cCCGGAGUA-------UACCGu---------CGUAAUCgCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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