miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 121530 0.66 0.967919
Target:  5'- cGGGCCUCGcgcgacuuCAGCGcgGGgGGCg -3'
miRNA:   3'- -CCCGGAGUauacc---GUCGUaaUCgCCG- -5'
24452 5' -53.3 NC_005264.1 + 4837 0.66 0.962618
Target:  5'- cGGGCCUCuguuucuagGGCguuagaguuauccuuAGagcUUGGCGGCa -3'
miRNA:   3'- -CCCGGAGuaua-----CCG---------------UCgu-AAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 86158 0.66 0.96534
Target:  5'- uGGGCgaCAgccugGUGGCcguggaAGCAUUggAGCGGa -3'
miRNA:   3'- -CCCGgaGUa----UACCG------UCGUAA--UCGCCg -5'
24452 5' -53.3 NC_005264.1 + 127098 0.66 0.96534
Target:  5'- cGGCCgcaGUcgGGCA-CG--GGCGGCg -3'
miRNA:   3'- cCCGGag-UAuaCCGUcGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 161324 0.66 0.958262
Target:  5'- gGGGCCcCAaaaaacGGC-GCAgccAGCGGCg -3'
miRNA:   3'- -CCCGGaGUaua---CCGuCGUaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 10220 0.66 0.968542
Target:  5'- cGGCCUCGc-UGGCcucgGGCucaaUAGCGGg -3'
miRNA:   3'- cCCGGAGUauACCG----UCGua--AUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 116528 0.66 0.968542
Target:  5'- cGGUCUUcgGUGGgGuCGUUGGgGGCu -3'
miRNA:   3'- cCCGGAGuaUACCgUcGUAAUCgCCG- -5'
24452 5' -53.3 NC_005264.1 + 92085 0.66 0.968542
Target:  5'- gGGGCgggUCAUGgaGGC-GCAUUucgucgcugcGGCGGCa -3'
miRNA:   3'- -CCCGg--AGUAUa-CCGuCGUAA----------UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 7080 0.66 0.971529
Target:  5'- gGGGaacaC-CAggaAUGGUAGCA--GGCGGCc -3'
miRNA:   3'- -CCCg---GaGUa--UACCGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 57471 0.66 0.961915
Target:  5'- -cGCCUguUuuccUGGCGGC---GGCGGCg -3'
miRNA:   3'- ccCGGAguAu---ACCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 141957 0.66 0.96156
Target:  5'- aGGCCUCAUGUuuaacggaaacagGGCAuGgAgUAGCaGGCu -3'
miRNA:   3'- cCCGGAGUAUA-------------CCGU-CgUaAUCG-CCG- -5'
24452 5' -53.3 NC_005264.1 + 122492 0.66 0.960843
Target:  5'- aGGGUCUCGgg-GGCGaugggcuugccgccGCAc--GCGGCg -3'
miRNA:   3'- -CCCGGAGUauaCCGU--------------CGUaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 60835 0.66 0.971529
Target:  5'- -cGCUUCAgcuUGGCGucggcgucggcGCGUgcGCGGCa -3'
miRNA:   3'- ccCGGAGUau-ACCGU-----------CGUAauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 82359 0.66 0.971529
Target:  5'- cGGCCU----UGGCGGCGa-AGCGGa -3'
miRNA:   3'- cCCGGAguauACCGUCGUaaUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 1583 0.66 0.974305
Target:  5'- aGGGaCCUCucgGUGG-GGCAaUGGUGGa -3'
miRNA:   3'- -CCC-GGAGua-UACCgUCGUaAUCGCCg -5'
24452 5' -53.3 NC_005264.1 + 116794 0.66 0.971529
Target:  5'- uGGCUUCcgGgGGagAGCAUU-GCGGCu -3'
miRNA:   3'- cCCGGAGuaUaCCg-UCGUAAuCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 1667 0.66 0.974305
Target:  5'- uGGGCgaCGguggGGCaaAGUAUUggGGCGGCc -3'
miRNA:   3'- -CCCGgaGUaua-CCG--UCGUAA--UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 12259 0.66 0.957121
Target:  5'- cGGGCCgUCccugagAUGacgaugccguacccUGGCGGCAg-GGCGGUg -3'
miRNA:   3'- -CCCGG-AG------UAU--------------ACCGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 122690 0.66 0.958262
Target:  5'- -cGUCUCGacgaugGGCGGCcgUcucGGCGGCg -3'
miRNA:   3'- ccCGGAGUaua---CCGUCGuaA---UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 148493 0.66 0.958262
Target:  5'- uGGGacgCGc-UGGUcGCGUUGGCGGCg -3'
miRNA:   3'- -CCCggaGUauACCGuCGUAAUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.