miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 84495 0.68 0.931319
Target:  5'- uGGGCCUUAcUAUGGagaAGCuguu-CGGCg -3'
miRNA:   3'- -CCCGGAGU-AUACCg--UCGuaaucGCCG- -5'
24452 5' -53.3 NC_005264.1 + 154837 0.69 0.888643
Target:  5'- gGGcGCCUCugccGGCcccGCAaUGGCGGCc -3'
miRNA:   3'- -CC-CGGAGuauaCCGu--CGUaAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 61421 0.69 0.894126
Target:  5'- cGGGUCUCGUAUgcuuucGGCGGCccgcuccuCGGCg -3'
miRNA:   3'- -CCCGGAGUAUA------CCGUCGuaauc---GCCG- -5'
24452 5' -53.3 NC_005264.1 + 121700 0.69 0.902062
Target:  5'- uGGCCcCGaccgcgagGGCAGCGU-GGUGGCg -3'
miRNA:   3'- cCCGGaGUaua-----CCGUCGUAaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 156453 0.69 0.902062
Target:  5'- uGGCCgug---GaGCAGCAcgAGCGGCu -3'
miRNA:   3'- cCCGGaguauaC-CGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 17352 0.68 0.908409
Target:  5'- -uGCCUUccgcGGCAGC--UGGCGGCg -3'
miRNA:   3'- ccCGGAGuauaCCGUCGuaAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 44605 0.68 0.908409
Target:  5'- aGGGuCCUUGUuccugGUGGCGGaCAUcaccGCGGCc -3'
miRNA:   3'- -CCC-GGAGUA-----UACCGUC-GUAau--CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 81004 0.68 0.908409
Target:  5'- uGGCCUCcgccuugGUGGUcgaAGCc--AGCGGCg -3'
miRNA:   3'- cCCGGAGua-----UACCG---UCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 157363 0.68 0.914509
Target:  5'- cGGGCCcuggcCGUGaugcugGGCGGCgg-GGCGGUu -3'
miRNA:   3'- -CCCGGa----GUAUa-----CCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 9529 0.69 0.888643
Target:  5'- uGGCCUCAcucguugccuuUGUcgcucGCAGCcggUGGCGGCu -3'
miRNA:   3'- cCCGGAGU-----------AUAc----CGUCGua-AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 13697 0.69 0.888643
Target:  5'- uGGCC-CAgggagaacUGGCAGCucguGCGGCu -3'
miRNA:   3'- cCCGGaGUau------ACCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 104897 0.69 0.874281
Target:  5'- aGGCCUCAggccgaacaGGCgccauAGCGggAGUGGCa -3'
miRNA:   3'- cCCGGAGUaua------CCG-----UCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 72677 0.75 0.607635
Target:  5'- -aGCCUCAaccUGGCGGCGUUcgugacGCGGCg -3'
miRNA:   3'- ccCGGAGUau-ACCGUCGUAAu-----CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 4282 0.74 0.628533
Target:  5'- cGGCCUgCAUGgcUGGcCAGUAagAGCGGCc -3'
miRNA:   3'- cCCGGA-GUAU--ACC-GUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 136234 0.74 0.643171
Target:  5'- aGGGCCgag-GUGGCGacggacacggcucauGgGUUAGCGGCg -3'
miRNA:   3'- -CCCGGaguaUACCGU---------------CgUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 123106 0.72 0.721687
Target:  5'- gGGGCUguugCAcg-GGCGGCGUc-GCGGCa -3'
miRNA:   3'- -CCCGGa---GUauaCCGUCGUAauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 42223 0.72 0.741751
Target:  5'- cGGGUUUCcgA-GGCGGCuaaacAGCGGCa -3'
miRNA:   3'- -CCCGGAGuaUaCCGUCGuaa--UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 55170 0.72 0.761415
Target:  5'- cGGCCUCugg-GcGCGGCugaaGGCGGCg -3'
miRNA:   3'- cCCGGAGuauaC-CGUCGuaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 104054 0.71 0.81723
Target:  5'- cGGCCUCAggggGGCGGUcgacgAUUA-CGGCg -3'
miRNA:   3'- cCCGGAGUaua-CCGUCG-----UAAUcGCCG- -5'
24452 5' -53.3 NC_005264.1 + 125106 0.7 0.834528
Target:  5'- aGGUCUUu--UGGCucGCGUcgUAGCGGCg -3'
miRNA:   3'- cCCGGAGuauACCGu-CGUA--AUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.