miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 155123 0.66 0.974305
Target:  5'- uGGCC----AUGcGCAGCGUUAGggaGGCg -3'
miRNA:   3'- cCCGGaguaUAC-CGUCGUAAUCg--CCG- -5'
24452 5' -53.3 NC_005264.1 + 22231 0.67 0.945888
Target:  5'- -cGCCUCGUc-GGCGGUcugGGCGGUc -3'
miRNA:   3'- ccCGGAGUAuaCCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 25196 0.67 0.941279
Target:  5'- aGGGCCgCGUAcguguUGGC-GCAcacGGUGGCc -3'
miRNA:   3'- -CCCGGaGUAU-----ACCGuCGUaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 74278 1.15 0.002072
Target:  5'- gGGGCCUCAUAUGGCAGCAUUAGCGGCg -3'
miRNA:   3'- -CCCGGAGUAUACCGUCGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 131648 0.66 0.966647
Target:  5'- -cGCCUCGgucuGCGGUgcccgccgccagaccGUUGGCGGCa -3'
miRNA:   3'- ccCGGAGUauacCGUCG---------------UAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 8071 0.66 0.96534
Target:  5'- cGGCCgcaGUcgGGCA-CG--GGCGGCg -3'
miRNA:   3'- cCCGGag-UAuaCCGUcGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 3465 0.66 0.960843
Target:  5'- aGGGUCUCGgg-GGCGaugggcuugccgccGCAc--GCGGCg -3'
miRNA:   3'- -CCCGGAGUauaCCGU--------------CGUaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 98760 0.66 0.958262
Target:  5'- uGGCC-CGgaaGGCGGCucugcuGCGGCu -3'
miRNA:   3'- cCCGGaGUauaCCGUCGuaau--CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 3663 0.66 0.958262
Target:  5'- -cGUCUCGacgaugGGCGGCcgUcucGGCGGCg -3'
miRNA:   3'- ccCGGAGUaua---CCGUCGuaA---UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 72382 0.67 0.945888
Target:  5'- cGGGUUUCAUGUGGaaCAGCucucccAGuCGGUg -3'
miRNA:   3'- -CCCGGAGUAUACC--GUCGuaa---UC-GCCG- -5'
24452 5' -53.3 NC_005264.1 + 47569 0.67 0.949827
Target:  5'- aGGCCUCGUgccagauAUGGCucgcggggacGCGUUGGgGGa -3'
miRNA:   3'- cCCGGAGUA-------UACCGu---------CGUAAUCgCCg -5'
24452 5' -53.3 NC_005264.1 + 42297 0.66 0.958262
Target:  5'- gGGGCCcCAaaaaacGGC-GCAgccAGCGGCg -3'
miRNA:   3'- -CCCGGaGUaua---CCGuCGUaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 150192 0.66 0.974305
Target:  5'- cGGCCUUAauagccacauUGGCGGCcuc-GCGGUa -3'
miRNA:   3'- cCCGGAGUau--------ACCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 82182 0.67 0.948969
Target:  5'- cGGCCggUCGgc-GGCGGCcaucguauuagacggUAGCGGCg -3'
miRNA:   3'- cCCGG--AGUauaCCGUCGua-------------AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 146415 0.66 0.968542
Target:  5'- aGGCCcCGc--GGCAGUcg-AGCGGCc -3'
miRNA:   3'- cCCGGaGUauaCCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 56906 0.66 0.958262
Target:  5'- uGGGCgagcaUUAUggGGCGGCGUacgUGcGUGGCg -3'
miRNA:   3'- -CCCGg----AGUAuaCCGUCGUA---AU-CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 143298 0.67 0.945888
Target:  5'- --aCCUCGcUccGGCAaCGUUGGCGGCg -3'
miRNA:   3'- cccGGAGU-AuaCCGUcGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 31934 0.67 0.941279
Target:  5'- cGGCCUCGcggcucGGCucugAGCucgcgagUGGCGGCg -3'
miRNA:   3'- cCCGGAGUaua---CCG----UCGua-----AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 2503 0.66 0.967919
Target:  5'- cGGGCCUCGcgcgacuuCAGCGcgGGgGGCg -3'
miRNA:   3'- -CCCGGAGUauacc---GUCGUaaUCgCCG- -5'
24452 5' -53.3 NC_005264.1 + 116409 0.66 0.96534
Target:  5'- aGGCCgacgucgagcgCAg--GGCGGCGUgcagccucGCGGCg -3'
miRNA:   3'- cCCGGa----------GUauaCCGUCGUAau------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.