miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24452 5' -53.3 NC_005264.1 + 161324 0.66 0.958262
Target:  5'- gGGGCCcCAaaaaacGGC-GCAgccAGCGGCg -3'
miRNA:   3'- -CCCGGaGUaua---CCGuCGUaa-UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 157363 0.68 0.914509
Target:  5'- cGGGCCcuggcCGUGaugcugGGCGGCgg-GGCGGUu -3'
miRNA:   3'- -CCCGGa----GUAUa-----CCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 156453 0.69 0.902062
Target:  5'- uGGCCgug---GaGCAGCAcgAGCGGCu -3'
miRNA:   3'- cCCGGaguauaC-CGUCGUaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 156164 0.76 0.545638
Target:  5'- aGGGCg-CAUAUGcGCGGCuuugcggcgUGGCGGCg -3'
miRNA:   3'- -CCCGgaGUAUAC-CGUCGua-------AUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 155123 0.66 0.974305
Target:  5'- uGGCC----AUGcGCAGCGUUAGggaGGCg -3'
miRNA:   3'- cCCGGaguaUAC-CGUCGUAAUCg--CCG- -5'
24452 5' -53.3 NC_005264.1 + 154837 0.69 0.888643
Target:  5'- gGGcGCCUCugccGGCcccGCAaUGGCGGCc -3'
miRNA:   3'- -CC-CGGAGuauaCCGu--CGUaAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 151888 0.69 0.888643
Target:  5'- cGGGCaucagcugUAUGUGGCGGaggggacGGCGGCu -3'
miRNA:   3'- -CCCGga------GUAUACCGUCguaa---UCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 150192 0.66 0.974305
Target:  5'- cGGCCUUAauagccacauUGGCGGCcuc-GCGGUa -3'
miRNA:   3'- cCCGGAGUau--------ACCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 148493 0.66 0.958262
Target:  5'- uGGGacgCGc-UGGUcGCGUUGGCGGCg -3'
miRNA:   3'- -CCCggaGUauACCGuCGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 146922 0.68 0.920362
Target:  5'- uGGGCUaUCGg--GGCAGUAguucGUGGCg -3'
miRNA:   3'- -CCCGG-AGUauaCCGUCGUaau-CGCCG- -5'
24452 5' -53.3 NC_005264.1 + 146618 0.69 0.866757
Target:  5'- gGGGgCUCAgagGGUAGC----GCGGCg -3'
miRNA:   3'- -CCCgGAGUauaCCGUCGuaauCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 146415 0.66 0.968542
Target:  5'- aGGCCcCGc--GGCAGUcg-AGCGGCc -3'
miRNA:   3'- cCCGGaGUauaCCGUCGuaaUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 145998 0.67 0.945888
Target:  5'- aGGGCCUC-UAcGGCGugcGCGUUaugGGCucgGGCg -3'
miRNA:   3'- -CCCGGAGuAUaCCGU---CGUAA---UCG---CCG- -5'
24452 5' -53.3 NC_005264.1 + 143298 0.67 0.945888
Target:  5'- --aCCUCGcUccGGCAaCGUUGGCGGCg -3'
miRNA:   3'- cccGGAGU-AuaCCGUcGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 141957 0.66 0.96156
Target:  5'- aGGCCUCAUGUuuaacggaaacagGGCAuGgAgUAGCaGGCu -3'
miRNA:   3'- cCCGGAGUAUA-------------CCGU-CgUaAUCG-CCG- -5'
24452 5' -53.3 NC_005264.1 + 140225 0.68 0.925965
Target:  5'- cGGGCCaagacuUGGCGGCGa-GGCGuGCa -3'
miRNA:   3'- -CCCGGaguau-ACCGUCGUaaUCGC-CG- -5'
24452 5' -53.3 NC_005264.1 + 137263 0.76 0.505434
Target:  5'- cGGCCagcUGUGUGGUugcgauuccgcGGCGUUGGCGGCg -3'
miRNA:   3'- cCCGGa--GUAUACCG-----------UCGUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 136234 0.74 0.643171
Target:  5'- aGGGCCgag-GUGGCGacggacacggcucauGgGUUAGCGGCg -3'
miRNA:   3'- -CCCGGaguaUACCGU---------------CgUAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 131648 0.66 0.966647
Target:  5'- -cGCCUCGgucuGCGGUgcccgccgccagaccGUUGGCGGCa -3'
miRNA:   3'- ccCGGAGUauacCGUCG---------------UAAUCGCCG- -5'
24452 5' -53.3 NC_005264.1 + 128918 0.75 0.56613
Target:  5'- cGGCCUuccCAgcccUGGCGGCAgaaaGGCGGCg -3'
miRNA:   3'- cCCGGA---GUau--ACCGUCGUaa--UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.