miRNA display CGI


Results 41 - 60 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 46284 0.68 0.694375
Target:  5'- aGCGCCGCAGcucGCUCauccGGCGUCUUu -3'
miRNA:   3'- -UGUGGCGUCuuuCGAGga--CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 46839 0.67 0.743046
Target:  5'- uAC-CCGaCAGAGGGCgacgcacacggCCUGGCGUUCa -3'
miRNA:   3'- -UGuGGC-GUCUUUCGa----------GGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 47218 0.69 0.594274
Target:  5'- -gGCCGUcGAuggcuggucgGAGCUCUUGGCgcagagcagGCCCCa -3'
miRNA:   3'- ugUGGCGuCU----------UUCGAGGACCG---------CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 51817 0.67 0.733464
Target:  5'- cCACCGCuucgaaccaGGAGAggggugggcGCUCCgcgGGCGUCaCCg -3'
miRNA:   3'- uGUGGCG---------UCUUU---------CGAGGa--CCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 53287 0.77 0.24383
Target:  5'- gGCGCCGCAGuuugguugccaggauGAGCUUUUGGC-CCCCu -3'
miRNA:   3'- -UGUGGCGUCu--------------UUCGAGGACCGcGGGG- -5'
24454 3' -58.9 NC_005264.1 + 54260 0.66 0.798272
Target:  5'- aGCGCCGCAGGGAGCgCUU--CGCCa- -3'
miRNA:   3'- -UGUGGCGUCUUUCGaGGAccGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 56851 0.69 0.634401
Target:  5'- -gGCUGcCAGAuuGCUCCUGGgGgCCa -3'
miRNA:   3'- ugUGGC-GUCUuuCGAGGACCgCgGGg -5'
24454 3' -58.9 NC_005264.1 + 61107 0.69 0.648463
Target:  5'- cGCGCCGCcaagacgcucuugagGGucuuGAGGUUCCUGGacaGCUCCu -3'
miRNA:   3'- -UGUGGCG---------------UC----UUUCGAGGACCg--CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 61470 0.67 0.723797
Target:  5'- aGCGCCGUucguucuAGCgcgCCgacGCGCCCCg -3'
miRNA:   3'- -UGUGGCGucuu---UCGa--GGac-CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 62609 0.68 0.684457
Target:  5'- aGCGgCGCGGAc-GUUCCgagcaacuGCGCCCCg -3'
miRNA:   3'- -UGUgGCGUCUuuCGAGGac------CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 62981 0.69 0.641434
Target:  5'- cCACCGCGGcuuuggcggacuccAAGGCgugCUUGGCGCaCuCCa -3'
miRNA:   3'- uGUGGCGUC--------------UUUCGa--GGACCGCG-G-GG- -5'
24454 3' -58.9 NC_005264.1 + 65106 0.71 0.515684
Target:  5'- gGCGauGuCGGAcAGCUCUUGGCGCCUg -3'
miRNA:   3'- -UGUggC-GUCUuUCGAGGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 65330 0.69 0.614312
Target:  5'- -aGCCGCGGc-AGCUCCUGGCaaUCUa -3'
miRNA:   3'- ugUGGCGUCuuUCGAGGACCGcgGGG- -5'
24454 3' -58.9 NC_005264.1 + 67629 0.67 0.761921
Target:  5'- cACGCgggCGCAGggGugUCCUGcGCGgCCCg -3'
miRNA:   3'- -UGUG---GCGUCuuUcgAGGAC-CGCgGGG- -5'
24454 3' -58.9 NC_005264.1 + 67676 0.68 0.654483
Target:  5'- gGCACCuugcagggGCAGAAuAGCUCU--GCGCCCg -3'
miRNA:   3'- -UGUGG--------CGUCUU-UCGAGGacCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 68256 0.7 0.574343
Target:  5'- cGCGCCGCGGGcggccuGCUgCUGcCGCCUCu -3'
miRNA:   3'- -UGUGGCGUCUuu----CGAgGACcGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 69570 0.68 0.694375
Target:  5'- cCACUGaAGccGGGGC-CCUGGCGCCaCCu -3'
miRNA:   3'- uGUGGCgUC--UUUCGaGGACCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 69651 0.72 0.436303
Target:  5'- aGCACCGUAccucagcuGCUCCgcccagucuggagcGGCGCCCCg -3'
miRNA:   3'- -UGUGGCGUcuuu----CGAGGa-------------CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 69828 0.67 0.714054
Target:  5'- gACGCCGCcgggguGAAGGCcgcccugCUUGGggcauCGCCCCu -3'
miRNA:   3'- -UGUGGCGu-----CUUUCGa------GGACC-----GCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 73001 1.12 0.001031
Target:  5'- gACACCGCAGAAAGCUCCUGGCGCCCCa -3'
miRNA:   3'- -UGUGGCGUCUUUCGAGGACCGCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.