miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 26178 0.72 0.441617
Target:  5'- gGCACUGuCGGcGGGGCcgUUGGCGCCCCa -3'
miRNA:   3'- -UGUGGC-GUC-UUUCGagGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 26362 0.73 0.406905
Target:  5'- uGCGCCGCGGcAGGCUgCgcGGCGCCg- -3'
miRNA:   3'- -UGUGGCGUCuUUCGAgGa-CCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 29812 0.73 0.393508
Target:  5'- cCGCCGCGGAAAGggucUUCCugucuaucuugucugUGGCGCUCCc -3'
miRNA:   3'- uGUGGCGUCUUUC----GAGG---------------ACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 30358 0.69 0.594274
Target:  5'- --cCCGCAG-GAGCcCCUucGGCGCCgCCg -3'
miRNA:   3'- uguGGCGUCuUUCGaGGA--CCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 30513 0.68 0.671501
Target:  5'- -gGCCGUccuccGGGGAGCUCCacgacccgccucgcUGGCGCgaaCCCu -3'
miRNA:   3'- ugUGGCG-----UCUUUCGAGG--------------ACCGCG---GGG- -5'
24454 3' -58.9 NC_005264.1 + 31198 0.68 0.70326
Target:  5'- gGCACCGCAGAccgAGGCgugaccaUCUGuucuucuccgcgcGCGCCCa -3'
miRNA:   3'- -UGUGGCGUCU---UUCGa------GGAC-------------CGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 31285 0.71 0.487256
Target:  5'- cGCACaUGCAGAagcguGAGCUUcgccgaCUGGUGUCCCa -3'
miRNA:   3'- -UGUG-GCGUCU-----UUCGAG------GACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 32015 0.66 0.810474
Target:  5'- gAUGCUGCGGAAccgccucgGGCUgccccggagugcgagCCaGGCGCCCg -3'
miRNA:   3'- -UGUGGCGUCUU--------UCGA---------------GGaCCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 33315 0.7 0.584292
Target:  5'- cACGcCCGCAGu-GGUUCCgucgccuccGGCGCCgCCa -3'
miRNA:   3'- -UGU-GGCGUCuuUCGAGGa--------CCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 33924 0.69 0.623349
Target:  5'- -uGCCGCcaggcugGGAAGGC-CgUGGCGCgCCg -3'
miRNA:   3'- ugUGGCG-------UCUUUCGaGgACCGCGgGG- -5'
24454 3' -58.9 NC_005264.1 + 34200 0.67 0.714054
Target:  5'- -aGCCGCGGcauGGAGCgcauaCUUGGCGUguCCCa -3'
miRNA:   3'- ugUGGCGUC---UUUCGa----GGACCGCG--GGG- -5'
24454 3' -58.9 NC_005264.1 + 35158 0.68 0.661499
Target:  5'- -gGCCGCGGugugucuggugggcAAGGUUCggGGCGUCCCc -3'
miRNA:   3'- ugUGGCGUC--------------UUUCGAGgaCCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 36375 0.69 0.594274
Target:  5'- -gACCGCGGGGAGUaucUCCgcgcuaGGCGCCa- -3'
miRNA:   3'- ugUGGCGUCUUUCG---AGGa-----CCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 37088 0.75 0.306683
Target:  5'- gACGCgGCGGc-AGUUCCggggacGGCGCCCCa -3'
miRNA:   3'- -UGUGgCGUCuuUCGAGGa-----CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 37258 0.69 0.644446
Target:  5'- uCACCGUGGAcgaggcGCUCCUGccgaaGCCCCc -3'
miRNA:   3'- uGUGGCGUCUuu----CGAGGACcg---CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 37645 0.66 0.776705
Target:  5'- gACGUgGCGGAgaugaAGGCUUCgguugccggcaucGGCGCCCCa -3'
miRNA:   3'- -UGUGgCGUCU-----UUCGAGGa------------CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 42824 0.66 0.798272
Target:  5'- cGguCCGCgagggGGGAGGCccaCCUGcCGCCCCa -3'
miRNA:   3'- -UguGGCG-----UCUUUCGa--GGACcGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 45163 0.73 0.424049
Target:  5'- gACGCCGaCAccaccacuGGCUCUUGGCGgCCCg -3'
miRNA:   3'- -UGUGGC-GUcuu-----UCGAGGACCGCgGGG- -5'
24454 3' -58.9 NC_005264.1 + 45393 0.66 0.81476
Target:  5'- gGCGCgGCaaacgauGGAGGGCggcgcCCUGcGCGCCgCg -3'
miRNA:   3'- -UGUGgCG-------UCUUUCGa----GGAC-CGCGGgG- -5'
24454 3' -58.9 NC_005264.1 + 45665 0.66 0.798272
Target:  5'- gGCGCCaagcGCAGuGAAGCaCgUGGCGCgauCCCg -3'
miRNA:   3'- -UGUGG----CGUC-UUUCGaGgACCGCG---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.