miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 117520 0.66 0.815612
Target:  5'- cGCGuCUGCGGuc-GCuccccuaaUCCUGGCGUCUCg -3'
miRNA:   3'- -UGU-GGCGUCuuuCG--------AGGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 80606 0.66 0.78938
Target:  5'- gGC-CCGgGGggGagcGUUCUUGG-GCCCCg -3'
miRNA:   3'- -UGuGGCgUCuuU---CGAGGACCgCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 159374 0.66 0.815612
Target:  5'- cACAUCGUGGAugcGGCaCCgGGCGCCa- -3'
miRNA:   3'- -UGUGGCGUCUu--UCGaGGaCCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 158335 0.66 0.798272
Target:  5'- gGCA-CGCGGAacacAAGCggCCgcaccGCGCCCCu -3'
miRNA:   3'- -UGUgGCGUCU----UUCGa-GGac---CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 42824 0.66 0.798272
Target:  5'- cGguCCGCgagggGGGAGGCccaCCUGcCGCCCCa -3'
miRNA:   3'- -UguGGCG-----UCUUUCGa--GGACcGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 148916 0.66 0.797389
Target:  5'- uGCugCgGCAGcuuuGcCUCCUGgacguucGCGCCCCg -3'
miRNA:   3'- -UGugG-CGUCuuu-C-GAGGAC-------CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 74614 0.66 0.807018
Target:  5'- uCugCGUAG-AAGCgaUCUUGGCGCgCUa -3'
miRNA:   3'- uGugGCGUCuUUCG--AGGACCGCGgGG- -5'
24454 3' -58.9 NC_005264.1 + 45393 0.66 0.81476
Target:  5'- gGCGCgGCaaacgauGGAGGGCggcgcCCUGcGCGCCgCg -3'
miRNA:   3'- -UGUGgCG-------UCUUUCGa----GGAC-CGCGGgG- -5'
24454 3' -58.9 NC_005264.1 + 129536 0.66 0.798272
Target:  5'- cCACUGCGGGcguGGGCUUa-GGCGUCgCCg -3'
miRNA:   3'- uGUGGCGUCU---UUCGAGgaCCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 116941 0.66 0.774873
Target:  5'- -uGCCGCGGcggcgcaaauacacuGAAGUUCgUGGCGgCCg -3'
miRNA:   3'- ugUGGCGUC---------------UUUCGAGgACCGCgGGg -5'
24454 3' -58.9 NC_005264.1 + 136334 0.66 0.771196
Target:  5'- cCGCCGCGGcguaGAAGCUgguUC-GGCGCCgCa -3'
miRNA:   3'- uGUGGCGUC----UUUCGA---GGaCCGCGGgG- -5'
24454 3' -58.9 NC_005264.1 + 129607 0.66 0.78938
Target:  5'- gGCGCgGCGGcGAAGCUUCUcgaguagacgccGaGCGCCgCCa -3'
miRNA:   3'- -UGUGgCGUC-UUUCGAGGA------------C-CGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 131714 0.66 0.780352
Target:  5'- cCugCGCGGc--GUUgCUGGCGCUCUg -3'
miRNA:   3'- uGugGCGUCuuuCGAgGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 161850 0.66 0.798272
Target:  5'- cGguCCGCgagggGGGAGGCccaCCUGcCGCCCCa -3'
miRNA:   3'- -UguGGCG-----UCUUUCGa--GGACcGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 61470 0.67 0.723797
Target:  5'- aGCGCCGUucguucuAGCgcgCCgacGCGCCCCg -3'
miRNA:   3'- -UGUGGCGucuu---UCGa--GGac-CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 124476 0.67 0.743046
Target:  5'- uCGCCGgAGGAGG-UCCUaacCGCCCCg -3'
miRNA:   3'- uGUGGCgUCUUUCgAGGAcc-GCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 102696 0.67 0.723797
Target:  5'- cGCACCGUAGGcuGCUCguccagCUGGagaGCCUg -3'
miRNA:   3'- -UGUGGCGUCUuuCGAG------GACCg--CGGGg -5'
24454 3' -58.9 NC_005264.1 + 137346 0.67 0.727673
Target:  5'- gACGCgGCcauccuAGCcucguucccguacgCCUGGCGCCCCc -3'
miRNA:   3'- -UGUGgCGucuu--UCGa-------------GGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 124236 0.67 0.723797
Target:  5'- cGCGCCGCGGcgaggcGAAGCUCUUcuuccGCGgCCUCg -3'
miRNA:   3'- -UGUGGCGUC------UUUCGAGGAc----CGC-GGGG- -5'
24454 3' -58.9 NC_005264.1 + 97467 0.67 0.743046
Target:  5'- aGCGCCGCuGGAAGaggaCCUGaccaaggaGCCCCa -3'
miRNA:   3'- -UGUGGCGuCUUUCga--GGACcg------CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.