miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 54260 0.66 0.798272
Target:  5'- aGCGCCGCAGGGAGCgCUU--CGCCa- -3'
miRNA:   3'- -UGUGGCGUCUUUCGaGGAccGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 45393 0.66 0.81476
Target:  5'- gGCGCgGCaaacgauGGAGGGCggcgcCCUGcGCGCCgCg -3'
miRNA:   3'- -UGUGgCG-------UCUUUCGa----GGAC-CGCGGgG- -5'
24454 3' -58.9 NC_005264.1 + 104040 0.66 0.807018
Target:  5'- cGCGCCGCGGAAaucGGUuugccgacaUCCUcuGCGCCgaCCa -3'
miRNA:   3'- -UGUGGCGUCUU---UCG---------AGGAc-CGCGG--GG- -5'
24454 3' -58.9 NC_005264.1 + 114407 0.66 0.774873
Target:  5'- aACGCCGCuGuucauguaauaacaaAAAugcccccacccGCUCCUGGCcgccgcccgacGCCCCa -3'
miRNA:   3'- -UGUGGCGuC---------------UUU-----------CGAGGACCG-----------CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 159374 0.66 0.815612
Target:  5'- cACAUCGUGGAugcGGCaCCgGGCGCCa- -3'
miRNA:   3'- -UGUGGCGUCUu--UCGaGGaCCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 78644 0.66 0.807018
Target:  5'- cCGCCGCGGc-GGC-CCU-GUGCCUCg -3'
miRNA:   3'- uGUGGCGUCuuUCGaGGAcCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 37645 0.66 0.776705
Target:  5'- gACGUgGCGGAgaugaAGGCUUCgguugccggcaucGGCGCCCCa -3'
miRNA:   3'- -UGUGgCGUCU-----UUCGAGGa------------CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 133516 0.66 0.780352
Target:  5'- -aGCCGCAGGAGGCgcugugUCCaugcaUGGCGCa-- -3'
miRNA:   3'- ugUGGCGUCUUUCG------AGG-----ACCGCGggg -5'
24454 3' -58.9 NC_005264.1 + 151042 0.66 0.810474
Target:  5'- gAUGCUGCGGAAccgccucgGGCUgccccggagugcgagCCaGGCGCCCg -3'
miRNA:   3'- -UGUGGCGUCUU--------UCGA---------------GGaCCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 77737 0.66 0.798272
Target:  5'- gACugCGCAG-AAGCUgaCUacGGCGCCg- -3'
miRNA:   3'- -UGugGCGUCuUUCGAg-GA--CCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 121416 0.66 0.807018
Target:  5'- cGC-CCGCAG-GAGC-CC-GGCGCCggCCu -3'
miRNA:   3'- -UGuGGCGUCuUUCGaGGaCCGCGG--GG- -5'
24454 3' -58.9 NC_005264.1 + 79701 0.66 0.780352
Target:  5'- gACACCaugaggGCAGAcgcgccuccgcGGC-CUUGGCGCCCg -3'
miRNA:   3'- -UGUGG------CGUCUu----------UCGaGGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 32015 0.66 0.810474
Target:  5'- gAUGCUGCGGAAccgccucgGGCUgccccggagugcgagCCaGGCGCCCg -3'
miRNA:   3'- -UGUGGCGUCUU--------UCGA---------------GGaCCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 93068 0.66 0.78938
Target:  5'- -uGCUGCGGGAGGggCCgcGGCGaCCUCg -3'
miRNA:   3'- ugUGGCGUCUUUCgaGGa-CCGC-GGGG- -5'
24454 3' -58.9 NC_005264.1 + 109708 0.66 0.780352
Target:  5'- cCGCgGCAGAuugcccGGcCUCCUcGGC-CCCCu -3'
miRNA:   3'- uGUGgCGUCUu-----UC-GAGGA-CCGcGGGG- -5'
24454 3' -58.9 NC_005264.1 + 2389 0.66 0.807018
Target:  5'- cGC-CCGCAG-GAGC-CC-GGCGCCggCCu -3'
miRNA:   3'- -UGuGGCGUCuUUCGaGGaCCGCGG--GG- -5'
24454 3' -58.9 NC_005264.1 + 117520 0.66 0.815612
Target:  5'- cGCGuCUGCGGuc-GCuccccuaaUCCUGGCGUCUCg -3'
miRNA:   3'- -UGU-GGCGUCuuuCG--------AGGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 97656 0.66 0.771196
Target:  5'- -uGCCGU-GAAAGCgCUgacucaUGGCGCCUCg -3'
miRNA:   3'- ugUGGCGuCUUUCGaGG------ACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 95424 0.66 0.815612
Target:  5'- -aGCCGCAGuuuGCUCUgcGGuUGCCCg -3'
miRNA:   3'- ugUGGCGUCuuuCGAGGa-CC-GCGGGg -5'
24454 3' -58.9 NC_005264.1 + 161850 0.66 0.798272
Target:  5'- cGguCCGCgagggGGGAGGCccaCCUGcCGCCCCa -3'
miRNA:   3'- -UguGGCG-----UCUUUCGa--GGACcGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.