miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 632 0.68 0.674496
Target:  5'- cGCGUCGCAGGcagcgcgauagAGGCUCac-GCGCCCCc -3'
miRNA:   3'- -UGUGGCGUCU-----------UUCGAGgacCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 1508 0.69 0.624354
Target:  5'- cACGCCGCuGGcuGCgCCguuuuuUGGgGCCCCg -3'
miRNA:   3'- -UGUGGCGuCUuuCGaGG------ACCgCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 2389 0.66 0.807018
Target:  5'- cGC-CCGCAG-GAGC-CC-GGCGCCggCCu -3'
miRNA:   3'- -UGuGGCGUCuUUCGaGGaCCGCGG--GG- -5'
24454 3' -58.9 NC_005264.1 + 3610 0.67 0.733464
Target:  5'- cCGCCGCGGggGGC-CgCgagggcgGGCGCgCUg -3'
miRNA:   3'- uGUGGCGUCuuUCGaG-Ga------CCGCGgGG- -5'
24454 3' -58.9 NC_005264.1 + 3828 0.71 0.52531
Target:  5'- -uGCgCGCGGAGAccuGCUCCUGGCauggGUCCUg -3'
miRNA:   3'- ugUG-GCGUCUUU---CGAGGACCG----CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 3905 0.67 0.733464
Target:  5'- uACGCCGCAuuGGucGCUCgUuGCGCUCUg -3'
miRNA:   3'- -UGUGGCGU--CUuuCGAGgAcCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 4288 0.71 0.481658
Target:  5'- -gGCgGCAGAGAGCacguccuuaucgucCCUGGCGUCCa -3'
miRNA:   3'- ugUGgCGUCUUUCGa-------------GGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 4327 0.67 0.761921
Target:  5'- cACAgCGCAGGccuGCcCCUGGCGgCUg -3'
miRNA:   3'- -UGUgGCGUCUuu-CGaGGACCGCgGGg -5'
24454 3' -58.9 NC_005264.1 + 5019 0.69 0.634401
Target:  5'- uUugCGCAGAggaggccacgAGGUUCCgcgucgugGGCGCCgCCu -3'
miRNA:   3'- uGugGCGUCU----------UUCGAGGa-------CCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 5209 0.67 0.723797
Target:  5'- cGCGCCGCGGcgaggcGAAGCUCUUcuuccGCGgCCUCg -3'
miRNA:   3'- -UGUGGCGUC------UUUCGAGGAc----CGC-GGGG- -5'
24454 3' -58.9 NC_005264.1 + 5449 0.67 0.743046
Target:  5'- uCGCCGgAGGAGG-UCCUaacCGCCCCg -3'
miRNA:   3'- uGUGGCgUCUUUCgAGGAcc-GCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 5569 0.77 0.243253
Target:  5'- aGCACCGCGGAcAGCgCCUGGCucaGUUCCu -3'
miRNA:   3'- -UGUGGCGUCUuUCGaGGACCG---CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 6539 0.72 0.450554
Target:  5'- -gGCgGCAGggGGCUUCggcagGaGCGCCUCg -3'
miRNA:   3'- ugUGgCGUCuuUCGAGGa----C-CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 6660 0.69 0.634401
Target:  5'- aGCuCCgGCAGAGA--UCCUGGCGCCa- -3'
miRNA:   3'- -UGuGG-CGUCUUUcgAGGACCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 7853 0.7 0.564434
Target:  5'- cUACCGCuagauuguGggGGCggCgUcGGCGCCCCa -3'
miRNA:   3'- uGUGGCGu-------CuuUCGa-GgA-CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 10887 0.68 0.704244
Target:  5'- -gGCCGUGGGGAaUUCCcGGUGCCCg -3'
miRNA:   3'- ugUGGCGUCUUUcGAGGaCCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 12216 0.72 0.454157
Target:  5'- cGCGCCGCcucgccAGAGAGCagacucgccccaccUCUGGCGCCuCCa -3'
miRNA:   3'- -UGUGGCG------UCUUUCGa-------------GGACCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 25014 0.68 0.664502
Target:  5'- gGCGCUGCAugccuCUCCUgaGGCGCCCg -3'
miRNA:   3'- -UGUGGCGUcuuucGAGGA--CCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 25935 0.67 0.761921
Target:  5'- uGCACUGCAcGAcGGGCUCaCguacGCGCCCa -3'
miRNA:   3'- -UGUGGCGU-CU-UUCGAG-Gac--CGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 26114 0.67 0.723797
Target:  5'- cCACCGCGc--GGCUCgUGGCGCggcgCCg -3'
miRNA:   3'- uGUGGCGUcuuUCGAGgACCGCGg---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.