miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 161850 0.66 0.798272
Target:  5'- cGguCCGCgagggGGGAGGCccaCCUGcCGCCCCa -3'
miRNA:   3'- -UguGGCG-----UCUUUCGa--GGACcGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 160398 0.69 0.634401
Target:  5'- -uGCCGCaAGGAagagugcaGGCUgCUGuGCGCCCa -3'
miRNA:   3'- ugUGGCG-UCUU--------UCGAgGAC-CGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 159374 0.66 0.815612
Target:  5'- cACAUCGUGGAugcGGCaCCgGGCGCCa- -3'
miRNA:   3'- -UGUGGCGUCUu--UCGaGGaCCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 158335 0.66 0.798272
Target:  5'- gGCA-CGCGGAacacAAGCggCCgcaccGCGCCCCu -3'
miRNA:   3'- -UGUgGCGUCU----UUCGa-GGac---CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 156901 0.66 0.807018
Target:  5'- aACGCCGCGGGuucGGGC-CgUGguuagauaGCGCCUCg -3'
miRNA:   3'- -UGUGGCGUCU---UUCGaGgAC--------CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 156285 0.69 0.644446
Target:  5'- uCACCGUGGAcgaggcGCUCCUGccgaaGCCCCc -3'
miRNA:   3'- uGUGGCGUCUuu----CGAGGACcg---CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 152950 0.69 0.634401
Target:  5'- -uGCCGCcagggcugGGAAGGC-CgUGGCGCgCCg -3'
miRNA:   3'- ugUGGCG--------UCUUUCGaGgACCGCGgGG- -5'
24454 3' -58.9 NC_005264.1 + 151042 0.66 0.810474
Target:  5'- gAUGCUGCGGAAccgccucgGGCUgccccggagugcgagCCaGGCGCCCg -3'
miRNA:   3'- -UGUGGCGUCUU--------UCGA---------------GGaCCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 149540 0.68 0.671501
Target:  5'- -gGCCGUccuccGGGGAGCUCCacgacccgccucgcUGGCGCgaaCCCu -3'
miRNA:   3'- ugUGGCG-----UCUUUCGAGG--------------ACCGCG---GGG- -5'
24454 3' -58.9 NC_005264.1 + 149385 0.69 0.594274
Target:  5'- --cCCGCAG-GAGCcCCUucGGCGCCgCCg -3'
miRNA:   3'- uguGGCGUCuUUCGaGGA--CCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 148916 0.66 0.797389
Target:  5'- uGCugCgGCAGcuuuGcCUCCUGgacguucGCGCCCCg -3'
miRNA:   3'- -UGugG-CGUCuuu-C-GAGGAC-------CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 148841 0.7 0.584292
Target:  5'- aACGCCGCcuAGAacuugGAGgUCUgGGCGaCCCCg -3'
miRNA:   3'- -UGUGGCG--UCU-----UUCgAGGaCCGC-GGGG- -5'
24454 3' -58.9 NC_005264.1 + 148343 0.72 0.450554
Target:  5'- -gACCGUgccccgggccGGGGAGCUCUUGGUGCUCa -3'
miRNA:   3'- ugUGGCG----------UCUUUCGAGGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 146229 0.68 0.694375
Target:  5'- uCGCCGC----GGCgUCgUGGCGCCCg -3'
miRNA:   3'- uGUGGCGucuuUCG-AGgACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 144417 0.67 0.761921
Target:  5'- cGCGCCGagcgAGAGGGCgcgCCUG-CGCCggCCg -3'
miRNA:   3'- -UGUGGCg---UCUUUCGa--GGACcGCGG--GG- -5'
24454 3' -58.9 NC_005264.1 + 144309 0.67 0.761921
Target:  5'- cGCGCCcuCAGggGGagaC-GGCGCCCCc -3'
miRNA:   3'- -UGUGGc-GUCuuUCgagGaCCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 143968 0.68 0.654483
Target:  5'- -aGCCGCGGu-GGCaauuuUCUUGGCGCUCg -3'
miRNA:   3'- ugUGGCGUCuuUCG-----AGGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 143748 0.72 0.450554
Target:  5'- cCGCCGCGGu--GCagUCCUGGCuCCCUa -3'
miRNA:   3'- uGUGGCGUCuuuCG--AGGACCGcGGGG- -5'
24454 3' -58.9 NC_005264.1 + 143068 0.67 0.752535
Target:  5'- gGCACCgGCAuAGAGCUaCUGGgGCUCa -3'
miRNA:   3'- -UGUGG-CGUcUUUCGAgGACCgCGGGg -5'
24454 3' -58.9 NC_005264.1 + 141769 0.73 0.382022
Target:  5'- gACGCCGCGGAagAAGaUCCuUGGCcuacacGCCCCu -3'
miRNA:   3'- -UGUGGCGUCU--UUCgAGG-ACCG------CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.