miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 73001 1.12 0.001031
Target:  5'- gACACCGCAGAAAGCUCCUGGCGCCCCa -3'
miRNA:   3'- -UGUGGCGUCUUUCGAGGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 124596 0.77 0.243253
Target:  5'- aGCACCGCGGAcAGCgCCUGGCucaGUUCCu -3'
miRNA:   3'- -UGUGGCGUCUuUCGaGGACCG---CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 5569 0.77 0.243253
Target:  5'- aGCACCGCGGAcAGCgCCUGGCucaGUUCCu -3'
miRNA:   3'- -UGUGGCGUCUuUCGaGGACCG---CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 53287 0.77 0.24383
Target:  5'- gGCGCCGCAGuuugguugccaggauGAGCUUUUGGC-CCCCu -3'
miRNA:   3'- -UGUGGCGUCu--------------UUCGAGGACCGcGGGG- -5'
24454 3' -58.9 NC_005264.1 + 37088 0.75 0.306683
Target:  5'- gACGCgGCGGc-AGUUCCggggacGGCGCCCCa -3'
miRNA:   3'- -UGUGgCGUCuuUCGAGGa-----CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 93553 0.74 0.350459
Target:  5'- uACugCGCA--AAGCUCCUuguuucGcGCGCCCCa -3'
miRNA:   3'- -UGugGCGUcuUUCGAGGA------C-CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 141769 0.73 0.382022
Target:  5'- gACGCCGCGGAagAAGaUCCuUGGCcuacacGCCCCu -3'
miRNA:   3'- -UGUGGCGUCU--UUCgAGG-ACCG------CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 119501 0.73 0.390203
Target:  5'- gGCugCGCAGGGcguGCUCCgaggcGGCaGCCCUc -3'
miRNA:   3'- -UGugGCGUCUUu--CGAGGa----CCG-CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 29812 0.73 0.393508
Target:  5'- cCGCCGCGGAAAGggucUUCCugucuaucuugucugUGGCGCUCCc -3'
miRNA:   3'- uGUGGCGUCUUUC----GAGG---------------ACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 125708 0.73 0.398498
Target:  5'- -gACCGCc---GGCgCCUGGUGCCCCu -3'
miRNA:   3'- ugUGGCGucuuUCGaGGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 126310 0.73 0.406905
Target:  5'- cGCGCgGCcGAuGGCUCCU-GCGCCCg -3'
miRNA:   3'- -UGUGgCGuCUuUCGAGGAcCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 26362 0.73 0.406905
Target:  5'- uGCGCCGCGGcAGGCUgCgcGGCGCCg- -3'
miRNA:   3'- -UGUGGCGUCuUUCGAgGa-CCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 133594 0.73 0.422315
Target:  5'- cGCGCCGCAGucuccgcuguGCUCCucgaccgcUGGCuCCCCa -3'
miRNA:   3'- -UGUGGCGUCuuu-------CGAGG--------ACCGcGGGG- -5'
24454 3' -58.9 NC_005264.1 + 45163 0.73 0.424049
Target:  5'- gACGCCGaCAccaccacuGGCUCUUGGCGgCCCg -3'
miRNA:   3'- -UGUGGC-GUcuu-----UCGAGGACCGCgGGG- -5'
24454 3' -58.9 NC_005264.1 + 75963 0.73 0.427529
Target:  5'- cCGCCGCcugugaGGAAAGCauugCCccacacgccgcuagcUGGCGCCCCc -3'
miRNA:   3'- uGUGGCG------UCUUUCGa---GG---------------ACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 85101 0.72 0.432781
Target:  5'- gGCGCCGUAGucAGCUUCUGcGCaGUCCUc -3'
miRNA:   3'- -UGUGGCGUCuuUCGAGGAC-CG-CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 69651 0.72 0.436303
Target:  5'- aGCACCGUAccucagcuGCUCCgcccagucuggagcGGCGCCCCg -3'
miRNA:   3'- -UGUGGCGUcuuu----CGAGGa-------------CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 26178 0.72 0.441617
Target:  5'- gGCACUGuCGGcGGGGCcgUUGGCGCCCCa -3'
miRNA:   3'- -UGUGGC-GUC-UUUCGagGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 148343 0.72 0.450554
Target:  5'- -gACCGUgccccgggccGGGGAGCUCUUGGUGCUCa -3'
miRNA:   3'- ugUGGCG----------UCUUUCGAGGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 143748 0.72 0.450554
Target:  5'- cCGCCGCGGu--GCagUCCUGGCuCCCUa -3'
miRNA:   3'- uGUGGCGUCuuuCG--AGGACCGcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.