miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 33315 0.7 0.584292
Target:  5'- cACGcCCGCAGu-GGUUCCgucgccuccGGCGCCgCCa -3'
miRNA:   3'- -UGU-GGCGUCuuUCGAGGa--------CCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 31285 0.71 0.487256
Target:  5'- cGCACaUGCAGAagcguGAGCUUcgccgaCUGGUGUCCCa -3'
miRNA:   3'- -UGUG-GCGUCU-----UUCGAG------GACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 78607 0.71 0.487256
Target:  5'- cACGCgGUAGGcAAGCUCgC-GGCGCCUCu -3'
miRNA:   3'- -UGUGgCGUCU-UUCGAG-GaCCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 104378 0.71 0.515684
Target:  5'- cGCGCgGCAGAuAGg--CUGGCGCCCg -3'
miRNA:   3'- -UGUGgCGUCUuUCgagGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 3828 0.71 0.52531
Target:  5'- -uGCgCGCGGAGAccuGCUCCUGGCauggGUCCUg -3'
miRNA:   3'- ugUG-GCGUCUUU---CGAGGACCG----CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 100381 0.7 0.535003
Target:  5'- aAUGCUGCGGAugccGCUgCU-GCGCCCCg -3'
miRNA:   3'- -UGUGGCGUCUuu--CGAgGAcCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 98233 0.7 0.544758
Target:  5'- cGCGCUGCGGAGAGgUUaugGGCGCaaugaCCa -3'
miRNA:   3'- -UGUGGCGUCUUUCgAGga-CCGCGg----GG- -5'
24454 3' -58.9 NC_005264.1 + 126879 0.7 0.564434
Target:  5'- cUACCGCuagauuguGggGGCggCgUcGGCGCCCCa -3'
miRNA:   3'- uGUGGCGu-------CuuUCGa-GgA-CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 68256 0.7 0.574343
Target:  5'- cGCGCCGCGGGcggccuGCUgCUGcCGCCUCu -3'
miRNA:   3'- -UGUGGCGUCUuu----CGAgGACcGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 123315 0.71 0.481658
Target:  5'- -gGCgGCAGAGAGCacguccuuaucgucCCUGGCGUCCa -3'
miRNA:   3'- ugUGgCGUCUUUCGa-------------GGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 131243 0.72 0.454157
Target:  5'- cGCGCCGCcucgccAGAGAGCagacucgccccaccUCUGGCGCCuCCa -3'
miRNA:   3'- -UGUGGCG------UCUUUCGa-------------GGACCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 125566 0.72 0.450554
Target:  5'- -gGCgGCAGggGGCUUCggcagGaGCGCCUCg -3'
miRNA:   3'- ugUGgCGUCuuUCGAGGa----C-CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 53287 0.77 0.24383
Target:  5'- gGCGCCGCAGuuugguugccaggauGAGCUUUUGGC-CCCCu -3'
miRNA:   3'- -UGUGGCGUCu--------------UUCGAGGACCGcGGGG- -5'
24454 3' -58.9 NC_005264.1 + 37088 0.75 0.306683
Target:  5'- gACGCgGCGGc-AGUUCCggggacGGCGCCCCa -3'
miRNA:   3'- -UGUGgCGUCuuUCGAGGa-----CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 93553 0.74 0.350459
Target:  5'- uACugCGCA--AAGCUCCUuguuucGcGCGCCCCa -3'
miRNA:   3'- -UGugGCGUcuUUCGAGGA------C-CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 141769 0.73 0.382022
Target:  5'- gACGCCGCGGAagAAGaUCCuUGGCcuacacGCCCCu -3'
miRNA:   3'- -UGUGGCGUCU--UUCgAGG-ACCG------CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 29812 0.73 0.393508
Target:  5'- cCGCCGCGGAAAGggucUUCCugucuaucuugucugUGGCGCUCCc -3'
miRNA:   3'- uGUGGCGUCUUUC----GAGG---------------ACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 133594 0.73 0.422315
Target:  5'- cGCGCCGCAGucuccgcuguGCUCCucgaccgcUGGCuCCCCa -3'
miRNA:   3'- -UGUGGCGUCuuu-------CGAGG--------ACCGcGGGG- -5'
24454 3' -58.9 NC_005264.1 + 45163 0.73 0.424049
Target:  5'- gACGCCGaCAccaccacuGGCUCUUGGCGgCCCg -3'
miRNA:   3'- -UGUGGC-GUcuu-----UCGAGGACCGCgGGG- -5'
24454 3' -58.9 NC_005264.1 + 69651 0.72 0.436303
Target:  5'- aGCACCGUAccucagcuGCUCCgcccagucuggagcGGCGCCCCg -3'
miRNA:   3'- -UGUGGCGUcuuu----CGAGGa-------------CCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.