miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 143068 0.67 0.752535
Target:  5'- gGCACCgGCAuAGAGCUaCUGGgGCUCa -3'
miRNA:   3'- -UGUGG-CGUcUUUCGAgGACCgCGGGg -5'
24454 3' -58.9 NC_005264.1 + 124476 0.67 0.743046
Target:  5'- uCGCCGgAGGAGG-UCCUaacCGCCCCg -3'
miRNA:   3'- uGUGGCgUCUUUCgAGGAcc-GCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 97467 0.67 0.743046
Target:  5'- aGCGCCGCuGGAAGaggaCCUGaccaaggaGCCCCa -3'
miRNA:   3'- -UGUGGCGuCUUUCga--GGACcg------CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 46839 0.67 0.743046
Target:  5'- uAC-CCGaCAGAGGGCgacgcacacggCCUGGCGUUCa -3'
miRNA:   3'- -UGuGGC-GUCUUUCGa----------GGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 5449 0.67 0.743046
Target:  5'- uCGCCGgAGGAGG-UCCUaacCGCCCCg -3'
miRNA:   3'- uGUGGCgUCUUUCgAGGAcc-GCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 98469 0.67 0.743046
Target:  5'- -aACCGuCAGAcAAGCUCCguggGGUGCUa- -3'
miRNA:   3'- ugUGGC-GUCU-UUCGAGGa---CCGCGGgg -5'
24454 3' -58.9 NC_005264.1 + 92878 0.67 0.743046
Target:  5'- gACGCCGCGGAAaaacagcaucAGCgaaCCaGG-GCCCUc -3'
miRNA:   3'- -UGUGGCGUCUU----------UCGa--GGaCCgCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 138311 0.67 0.737307
Target:  5'- cGCACCGCAGGcAAGUuguggUCaUGGCGCgugcgcgacaaggcgCCCg -3'
miRNA:   3'- -UGUGGCGUCU-UUCG-----AGgACCGCG---------------GGG- -5'
24454 3' -58.9 NC_005264.1 + 3905 0.67 0.733464
Target:  5'- uACGCCGCAuuGGucGCUCgUuGCGCUCUg -3'
miRNA:   3'- -UGUGGCGU--CUuuCGAGgAcCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 118942 0.67 0.733464
Target:  5'- -gGCCGCGcucAucGuCUCC-GGCGCCCCc -3'
miRNA:   3'- ugUGGCGUc--UuuC-GAGGaCCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 122637 0.67 0.733464
Target:  5'- cCGCCGCGGggGGC-CgCgagggcgGGCGCgCUg -3'
miRNA:   3'- uGUGGCGUCuuUCGaG-Ga------CCGCGgGG- -5'
24454 3' -58.9 NC_005264.1 + 3610 0.67 0.733464
Target:  5'- cCGCCGCGGggGGC-CgCgagggcgGGCGCgCUg -3'
miRNA:   3'- uGUGGCGUCuuUCGaG-Ga------CCGCGgGG- -5'
24454 3' -58.9 NC_005264.1 + 51817 0.67 0.733464
Target:  5'- cCACCGCuucgaaccaGGAGAggggugggcGCUCCgcgGGCGUCaCCg -3'
miRNA:   3'- uGUGGCG---------UCUUU---------CGAGGa--CCGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 137346 0.67 0.727673
Target:  5'- gACGCgGCcauccuAGCcucguucccguacgCCUGGCGCCCCc -3'
miRNA:   3'- -UGUGgCGucuu--UCGa-------------GGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 124236 0.67 0.723797
Target:  5'- cGCGCCGCGGcgaggcGAAGCUCUUcuuccGCGgCCUCg -3'
miRNA:   3'- -UGUGGCGUC------UUUCGAGGAc----CGC-GGGG- -5'
24454 3' -58.9 NC_005264.1 + 102696 0.67 0.723797
Target:  5'- cGCACCGUAGGcuGCUCguccagCUGGagaGCCUg -3'
miRNA:   3'- -UGUGGCGUCUuuCGAG------GACCg--CGGGg -5'
24454 3' -58.9 NC_005264.1 + 26114 0.67 0.723797
Target:  5'- cCACCGCGc--GGCUCgUGGCGCggcgCCg -3'
miRNA:   3'- uGUGGCGUcuuUCGAGgACCGCGg---GG- -5'
24454 3' -58.9 NC_005264.1 + 5209 0.67 0.723797
Target:  5'- cGCGCCGCGGcgaggcGAAGCUCUUcuuccGCGgCCUCg -3'
miRNA:   3'- -UGUGGCGUC------UUUCGAGGAc----CGC-GGGG- -5'
24454 3' -58.9 NC_005264.1 + 61470 0.67 0.723797
Target:  5'- aGCGCCGUucguucuAGCgcgCCgacGCGCCCCg -3'
miRNA:   3'- -UGUGGCGucuu---UCGa--GGac-CGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 69828 0.67 0.714054
Target:  5'- gACGCCGCcgggguGAAGGCcgcccugCUUGGggcauCGCCCCu -3'
miRNA:   3'- -UGUGGCGu-----CUUUCGa------GGACC-----GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.