miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 3' -58.9 NC_005264.1 + 80606 0.66 0.78938
Target:  5'- gGC-CCGgGGggGagcGUUCUUGG-GCCCCg -3'
miRNA:   3'- -UGuGGCgUCuuU---CGAGGACCgCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 129607 0.66 0.78938
Target:  5'- gGCGCgGCGGcGAAGCUUCUcgaguagacgccGaGCGCCgCCa -3'
miRNA:   3'- -UGUGgCGUC-UUUCGAGGA------------C-CGCGG-GG- -5'
24454 3' -58.9 NC_005264.1 + 74836 0.66 0.78938
Target:  5'- gGCACCaGgGGcAGGCUUCUGGaaccuCCCCg -3'
miRNA:   3'- -UGUGG-CgUCuUUCGAGGACCgc---GGGG- -5'
24454 3' -58.9 NC_005264.1 + 93068 0.66 0.78938
Target:  5'- -uGCUGCGGGAGGggCCgcGGCGaCCUCg -3'
miRNA:   3'- ugUGGCGUCUUUCgaGGa-CCGC-GGGG- -5'
24454 3' -58.9 NC_005264.1 + 79701 0.66 0.780352
Target:  5'- gACACCaugaggGCAGAcgcgccuccgcGGC-CUUGGCGCCCg -3'
miRNA:   3'- -UGUGG------CGUCUu----------UCGaGGACCGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 109708 0.66 0.780352
Target:  5'- cCGCgGCAGAuugcccGGcCUCCUcGGC-CCCCu -3'
miRNA:   3'- uGUGgCGUCUu-----UC-GAGGA-CCGcGGGG- -5'
24454 3' -58.9 NC_005264.1 + 133516 0.66 0.780352
Target:  5'- -aGCCGCAGGAGGCgcugugUCCaugcaUGGCGCa-- -3'
miRNA:   3'- ugUGGCGUCUUUCG------AGG-----ACCGCGggg -5'
24454 3' -58.9 NC_005264.1 + 126851 0.66 0.780352
Target:  5'- cGCugCGCGuuucGCUCUccGCGCCCCc -3'
miRNA:   3'- -UGugGCGUcuuuCGAGGacCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 131714 0.66 0.780352
Target:  5'- cCugCGCGGc--GUUgCUGGCGCUCUg -3'
miRNA:   3'- uGugGCGUCuuuCGAgGACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 37645 0.66 0.776705
Target:  5'- gACGUgGCGGAgaugaAGGCUUCgguugccggcaucGGCGCCCCa -3'
miRNA:   3'- -UGUGgCGUCU-----UUCGAGGa------------CCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 116941 0.66 0.774873
Target:  5'- -uGCCGCGGcggcgcaaauacacuGAAGUUCgUGGCGgCCg -3'
miRNA:   3'- ugUGGCGUC---------------UUUCGAGgACCGCgGGg -5'
24454 3' -58.9 NC_005264.1 + 114407 0.66 0.774873
Target:  5'- aACGCCGCuGuucauguaauaacaaAAAugcccccacccGCUCCUGGCcgccgcccgacGCCCCa -3'
miRNA:   3'- -UGUGGCGuC---------------UUU-----------CGAGGACCG-----------CGGGG- -5'
24454 3' -58.9 NC_005264.1 + 97656 0.66 0.771196
Target:  5'- -uGCCGU-GAAAGCgCUgacucaUGGCGCCUCg -3'
miRNA:   3'- ugUGGCGuCUUUCGaGG------ACCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 136334 0.66 0.771196
Target:  5'- cCGCCGCGGcguaGAAGCUgguUC-GGCGCCgCa -3'
miRNA:   3'- uGUGGCGUC----UUUCGA---GGaCCGCGGgG- -5'
24454 3' -58.9 NC_005264.1 + 67629 0.67 0.761921
Target:  5'- cACGCgggCGCAGggGugUCCUGcGCGgCCCg -3'
miRNA:   3'- -UGUG---GCGUCuuUcgAGGAC-CGCgGGG- -5'
24454 3' -58.9 NC_005264.1 + 4327 0.67 0.761921
Target:  5'- cACAgCGCAGGccuGCcCCUGGCGgCUg -3'
miRNA:   3'- -UGUgGCGUCUuu-CGaGGACCGCgGGg -5'
24454 3' -58.9 NC_005264.1 + 25935 0.67 0.761921
Target:  5'- uGCACUGCAcGAcGGGCUCaCguacGCGCCCa -3'
miRNA:   3'- -UGUGGCGU-CU-UUCGAG-Gac--CGCGGGg -5'
24454 3' -58.9 NC_005264.1 + 144417 0.67 0.761921
Target:  5'- cGCGCCGagcgAGAGGGCgcgCCUG-CGCCggCCg -3'
miRNA:   3'- -UGUGGCg---UCUUUCGa--GGACcGCGG--GG- -5'
24454 3' -58.9 NC_005264.1 + 144309 0.67 0.761921
Target:  5'- cGCGCCcuCAGggGGagaC-GGCGCCCCc -3'
miRNA:   3'- -UGUGGc-GUCuuUCgagGaCCGCGGGG- -5'
24454 3' -58.9 NC_005264.1 + 123354 0.67 0.761921
Target:  5'- cACAgCGCAGGccuGCcCCUGGCGgCUg -3'
miRNA:   3'- -UGUgGCGUCUuu-CGaGGACCGCgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.