Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24454 | 5' | -57.5 | NC_005264.1 | + | 104927 | 0.68 | 0.757662 |
Target: 5'- aGGCGGCGGAacccccagccgugccAAGCGCCGaGCcucGUGg -3' miRNA: 3'- aUCGUCGCCU---------------UUCGCGGC-CGccaUAC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 133944 | 0.68 | 0.753828 |
Target: 5'- -uGCGGUGGGAAGCuugGCCGgggucuucGCGGUGg- -3' miRNA: 3'- auCGUCGCCUUUCG---CGGC--------CGCCAUac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 117846 | 0.68 | 0.753828 |
Target: 5'- -cGCGGCGGAGuGCGCaugcaaggcaUGGCGGa--- -3' miRNA: 3'- auCGUCGCCUUuCGCG----------GCCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 103718 | 0.68 | 0.753828 |
Target: 5'- gAGCGGCGGcgcggcaucAGCGgCGGCGGc--- -3' miRNA: 3'- aUCGUCGCCuu-------UCGCgGCCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 52448 | 0.68 | 0.752867 |
Target: 5'- gAGCAGCGucagcauGCGCCcgccgucGGCGGUAUu -3' miRNA: 3'- aUCGUCGCcuuu---CGCGG-------CCGCCAUAc -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 34522 | 0.68 | 0.74417 |
Target: 5'- aAGCAggauGCGGuuGGGCGuuGGCGGg--- -3' miRNA: 3'- aUCGU----CGCCu-UUCGCggCCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 153549 | 0.68 | 0.74417 |
Target: 5'- aAGCAggauGCGGuuGGGCGuuGGCGGg--- -3' miRNA: 3'- aUCGU----CGCCu-UUCGCggCCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 120722 | 0.68 | 0.724568 |
Target: 5'- cGGUcgGGCGGAGgacGGUGCCGGCGa---- -3' miRNA: 3'- aUCG--UCGCCUU---UCGCGGCCGCcauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 97666 | 0.68 | 0.724568 |
Target: 5'- aGGCcGCGGccauggccagagAGGGCGCCGccGCGGUGUu -3' miRNA: 3'- aUCGuCGCC------------UUUCGCGGC--CGCCAUAc -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 60841 | 0.68 | 0.724568 |
Target: 5'- cGGUAGgGGAAAGCaGCuuCGGCGGa--- -3' miRNA: 3'- aUCGUCgCCUUUCG-CG--GCCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 16762 | 0.68 | 0.723579 |
Target: 5'- cGGUAGCGaggucccGAucGuCGCCGGCGGUcucuGUGg -3' miRNA: 3'- aUCGUCGC-------CUuuC-GCGGCCGCCA----UAC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 149881 | 0.68 | 0.714642 |
Target: 5'- cGGCGGCGGc--GCGCCGccCGGUAg- -3' miRNA: 3'- aUCGUCGCCuuuCGCGGCc-GCCAUac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 126083 | 0.68 | 0.714642 |
Target: 5'- aAGCGGCGac-GGCGCCGGcCGGc--- -3' miRNA: 3'- aUCGUCGCcuuUCGCGGCC-GCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 21754 | 0.68 | 0.714642 |
Target: 5'- cGGCGGCGGccgucuuGAGCGCCguaacuuuGGCGGc--- -3' miRNA: 3'- aUCGUCGCCu------UUCGCGG--------CCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 7056 | 0.68 | 0.714642 |
Target: 5'- aAGCGGCGac-GGCGCCGGcCGGc--- -3' miRNA: 3'- aUCGUCGCcuuUCGCGGCC-GCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 30855 | 0.68 | 0.714642 |
Target: 5'- cGGCGGCGGc--GCGCCGccCGGUAg- -3' miRNA: 3'- aUCGUCGCCuuuCGCGGCc-GCCAUac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 18014 | 0.68 | 0.713646 |
Target: 5'- cGGCGGCGGGucggccgcggucAGGUuaaccauGUCGGCGGUAg- -3' miRNA: 3'- aUCGUCGCCU------------UUCG-------CGGCCGCCAUac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 37132 | 0.68 | 0.704647 |
Target: 5'- --aCAGgGGcaccAGGCGCCGGCGGUc-- -3' miRNA: 3'- aucGUCgCCu---UUCGCGGCCGCCAuac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 47308 | 0.68 | 0.703644 |
Target: 5'- aUGGCAGCGGGGAacugcccGCGUCGaggcGUGGUGUu -3' miRNA: 3'- -AUCGUCGCCUUU-------CGCGGC----CGCCAUAc -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 145922 | 0.69 | 0.684481 |
Target: 5'- cGGCGGCGGGucAGCGCgGGCauGGg--- -3' miRNA: 3'- aUCGUCGCCUu-UCGCGgCCG--CCauac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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