miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 5' -57.5 NC_005264.1 + 154804 0.66 0.817057
Target:  5'- aAGaGGCGGAGGGCGCgguggcgccgucgUGGCGGg--- -3'
miRNA:   3'- aUCgUCGCCUUUCGCG-------------GCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 67939 0.66 0.809204
Target:  5'- -uGUAGCGGGGuucccGGCGCCuGCGGc--- -3'
miRNA:   3'- auCGUCGCCUU-----UCGCGGcCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 95440 0.66 0.809204
Target:  5'- aAGCcgucGUGGAAuacgcuaccGCGCCGGCGGg--- -3'
miRNA:   3'- aUCGu---CGCCUUu--------CGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 2896 0.66 0.809204
Target:  5'- -cGCGGCGGGGAGgGCgaCGGCGa---- -3'
miRNA:   3'- auCGUCGCCUUUCgCG--GCCGCcauac -5'
24454 5' -57.5 NC_005264.1 + 81812 0.66 0.809204
Target:  5'- gUAGaCGGCGGGuAGGCGCCGcUGGUu-- -3'
miRNA:   3'- -AUC-GUCGCCU-UUCGCGGCcGCCAuac -5'
24454 5' -57.5 NC_005264.1 + 67054 0.66 0.809204
Target:  5'- aGGCGGCGG-AAGCGCCuGGaaCGaGUAc- -3'
miRNA:   3'- aUCGUCGCCuUUCGCGG-CC--GC-CAUac -5'
24454 5' -57.5 NC_005264.1 + 121922 0.66 0.809204
Target:  5'- -cGCGGCGGGGAGgGCgaCGGCGa---- -3'
miRNA:   3'- auCGUCGCCUUUCgCG--GCCGCcauac -5'
24454 5' -57.5 NC_005264.1 + 68712 0.67 0.801221
Target:  5'- cAGCAGCGGGuaccuuuccaccagcGGCGCCagaaccucgGGCGGg--- -3'
miRNA:   3'- aUCGUCGCCUu--------------UCGCGG---------CCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 25614 0.67 0.791296
Target:  5'- cGGCGuuGCGGAAcaCGgCGGCGGUGg- -3'
miRNA:   3'- aUCGU--CGCCUUucGCgGCCGCCAUac -5'
24454 5' -57.5 NC_005264.1 + 3610 0.67 0.791296
Target:  5'- gUGGUGGaCGGugGGCGCUgugGGCGGgGUGg -3'
miRNA:   3'- -AUCGUC-GCCuuUCGCGG---CCGCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 75414 0.67 0.791296
Target:  5'- cGGCcGCGGgcAGUGUaCGGCGGgccGUGa -3'
miRNA:   3'- aUCGuCGCCuuUCGCG-GCCGCCa--UAC- -5'
24454 5' -57.5 NC_005264.1 + 25909 0.67 0.782122
Target:  5'- aGGCgaacagauGGCGGggGGCGCUGuaGCGGa--- -3'
miRNA:   3'- aUCG--------UCGCCuuUCGCGGC--CGCCauac -5'
24454 5' -57.5 NC_005264.1 + 10077 0.67 0.782122
Target:  5'- -cGCGGCGGAAucuccCGCCGGgGGc--- -3'
miRNA:   3'- auCGUCGCCUUuc---GCGGCCgCCauac -5'
24454 5' -57.5 NC_005264.1 + 120903 0.67 0.782122
Target:  5'- -cGCGGCGGAAAaacuaCGCCGaGCGGc--- -3'
miRNA:   3'- auCGUCGCCUUUc----GCGGC-CGCCauac -5'
24454 5' -57.5 NC_005264.1 + 57486 0.67 0.782122
Target:  5'- cGGCGGCGGcGAagaugcuggcGCGCgCGGCGGc--- -3'
miRNA:   3'- aUCGUCGCCuUU----------CGCG-GCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 55361 0.67 0.772814
Target:  5'- uUGGCcauAGcCGGGccGCGUCGGCGGUc-- -3'
miRNA:   3'- -AUCG---UC-GCCUuuCGCGGCCGCCAuac -5'
24454 5' -57.5 NC_005264.1 + 79220 0.67 0.772814
Target:  5'- aGGCuGCGuGcAGGCGgCGGCGGggGUGu -3'
miRNA:   3'- aUCGuCGC-CuUUCGCgGCCGCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 31522 0.67 0.763379
Target:  5'- aGGCucgGGCGGGGAGgGCCGuuGGgGUGg -3'
miRNA:   3'- aUCG---UCGCCUUUCgCGGCcgCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 150549 0.67 0.763379
Target:  5'- aGGCucgGGCGGGGAGgGCCGuuGGgGUGg -3'
miRNA:   3'- aUCG---UCGCCUUUCgCGGCcgCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 96106 0.67 0.763379
Target:  5'- -uGCcGCGGuuuAGGCGCCGGCGc---- -3'
miRNA:   3'- auCGuCGCCu--UUCGCGGCCGCcauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.