miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 5' -57.5 NC_005264.1 + 36745 0.72 0.502861
Target:  5'- -cGCAGCGcGAcGGCGCCGGcCGGc--- -3'
miRNA:   3'- auCGUCGC-CUuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 37132 0.68 0.704647
Target:  5'- --aCAGgGGcaccAGGCGCCGGCGGUc-- -3'
miRNA:   3'- aucGUCgCCu---UUCGCGGCCGCCAuac -5'
24454 5' -57.5 NC_005264.1 + 40809 0.66 0.826469
Target:  5'- gGGCGcUGGAugauuAGCGCCGGcCGGUc-- -3'
miRNA:   3'- aUCGUcGCCUu----UCGCGGCC-GCCAuac -5'
24454 5' -57.5 NC_005264.1 + 43214 0.66 0.817921
Target:  5'- gGGgGGgGGggGGCuaCGGCGGg--- -3'
miRNA:   3'- aUCgUCgCCuuUCGcgGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 43627 0.66 0.817921
Target:  5'- aGGCu-CGGAAGcGCGCCGGCgaggucguaGGUGUa -3'
miRNA:   3'- aUCGucGCCUUU-CGCGGCCG---------CCAUAc -5'
24454 5' -57.5 NC_005264.1 + 47308 0.68 0.703644
Target:  5'- aUGGCAGCGGGGAacugcccGCGUCGaggcGUGGUGUu -3'
miRNA:   3'- -AUCGUCGCCUUU-------CGCGGC----CGCCAUAc -5'
24454 5' -57.5 NC_005264.1 + 50571 0.66 0.851021
Target:  5'- -cGCGuGCGGGAAGCGCacgCGGCGcUGa- -3'
miRNA:   3'- auCGU-CGCCUUUCGCG---GCCGCcAUac -5'
24454 5' -57.5 NC_005264.1 + 52448 0.68 0.752867
Target:  5'- gAGCAGCGucagcauGCGCCcgccgucGGCGGUAUu -3'
miRNA:   3'- aUCGUCGCcuuu---CGCGG-------CCGCCAUAc -5'
24454 5' -57.5 NC_005264.1 + 55361 0.67 0.772814
Target:  5'- uUGGCcauAGcCGGGccGCGUCGGCGGUc-- -3'
miRNA:   3'- -AUCG---UC-GCCUuuCGCGGCCGCCAuac -5'
24454 5' -57.5 NC_005264.1 + 56533 0.71 0.562176
Target:  5'- cGGCGGCacaGGugauGGUGCCGGCGGggaAUGu -3'
miRNA:   3'- aUCGUCG---CCuu--UCGCGGCCGCCa--UAC- -5'
24454 5' -57.5 NC_005264.1 + 57136 0.66 0.842217
Target:  5'- gGGC-GCGGAcguaggcuggucuGucuuuGCGCCGGCGGg--- -3'
miRNA:   3'- aUCGuCGCCU-------------Uu----CGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 57486 0.67 0.782122
Target:  5'- cGGCGGCGGcGAagaugcuggcGCGCgCGGCGGc--- -3'
miRNA:   3'- aUCGUCGCCuUU----------CGCG-GCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 60269 0.69 0.674328
Target:  5'- gAGCuGCGGuGAGCGCCGcGuCGGgcAUGa -3'
miRNA:   3'- aUCGuCGCCuUUCGCGGC-C-GCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 60841 0.68 0.724568
Target:  5'- cGGUAGgGGAAAGCaGCuuCGGCGGa--- -3'
miRNA:   3'- aUCGUCgCCUUUCG-CG--GCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 65568 0.69 0.652906
Target:  5'- aGGCAGCGGccacuaccgugccAAGGC-CCGGCGGc--- -3'
miRNA:   3'- aUCGUCGCC-------------UUUCGcGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 67054 0.66 0.809204
Target:  5'- aGGCGGCGG-AAGCGCCuGGaaCGaGUAc- -3'
miRNA:   3'- aUCGUCGCCuUUCGCGG-CC--GC-CAUac -5'
24454 5' -57.5 NC_005264.1 + 67939 0.66 0.809204
Target:  5'- -uGUAGCGGGGuucccGGCGCCuGCGGc--- -3'
miRNA:   3'- auCGUCGCCUU-----UCGCGGcCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 68712 0.67 0.801221
Target:  5'- cAGCAGCGGGuaccuuuccaccagcGGCGCCagaaccucgGGCGGg--- -3'
miRNA:   3'- aUCGUCGCCUu--------------UCGCGG---------CCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 69508 0.66 0.817921
Target:  5'- -cGCGGauugcgGGGGAGUGCCGG-GGUcgGa -3'
miRNA:   3'- auCGUCg-----CCUUUCGCGGCCgCCAuaC- -5'
24454 5' -57.5 NC_005264.1 + 73038 1.05 0.003238
Target:  5'- cUAGCAGCGGAAAGCGCCGGCGGUAUGc -3'
miRNA:   3'- -AUCGUCGCCUUUCGCGGCCGCCAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.