miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 5' -57.5 NC_005264.1 + 80518 0.69 0.664141
Target:  5'- cAGCAGCuaacgauGAAuugcAGCGCCGGCGGc--- -3'
miRNA:   3'- aUCGUCGc------CUU----UCGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 60269 0.69 0.674328
Target:  5'- gAGCuGCGGuGAGCGCCGcGuCGGgcAUGa -3'
miRNA:   3'- aUCGuCGCCuUUCGCGGC-C-GCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 145922 0.69 0.684481
Target:  5'- cGGCGGCGGGucAGCGCgGGCauGGg--- -3'
miRNA:   3'- aUCGUCGCCUu-UCGCGgCCG--CCauac -5'
24454 5' -57.5 NC_005264.1 + 47308 0.68 0.703644
Target:  5'- aUGGCAGCGGGGAacugcccGCGUCGaggcGUGGUGUu -3'
miRNA:   3'- -AUCGUCGCCUUU-------CGCGGC----CGCCAUAc -5'
24454 5' -57.5 NC_005264.1 + 37132 0.68 0.704647
Target:  5'- --aCAGgGGcaccAGGCGCCGGCGGUc-- -3'
miRNA:   3'- aucGUCgCCu---UUCGCGGCCGCCAuac -5'
24454 5' -57.5 NC_005264.1 + 18014 0.68 0.713646
Target:  5'- cGGCGGCGGGucggccgcggucAGGUuaaccauGUCGGCGGUAg- -3'
miRNA:   3'- aUCGUCGCCU------------UUCG-------CGGCCGCCAUac -5'
24454 5' -57.5 NC_005264.1 + 7056 0.68 0.714642
Target:  5'- aAGCGGCGac-GGCGCCGGcCGGc--- -3'
miRNA:   3'- aUCGUCGCcuuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 30855 0.68 0.714642
Target:  5'- cGGCGGCGGc--GCGCCGccCGGUAg- -3'
miRNA:   3'- aUCGUCGCCuuuCGCGGCc-GCCAUac -5'
24454 5' -57.5 NC_005264.1 + 126083 0.68 0.714642
Target:  5'- aAGCGGCGac-GGCGCCGGcCGGc--- -3'
miRNA:   3'- aUCGUCGCcuuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 149881 0.68 0.714642
Target:  5'- cGGCGGCGGc--GCGCCGccCGGUAg- -3'
miRNA:   3'- aUCGUCGCCuuuCGCGGCc-GCCAUac -5'
24454 5' -57.5 NC_005264.1 + 21754 0.68 0.714642
Target:  5'- cGGCGGCGGccgucuuGAGCGCCguaacuuuGGCGGc--- -3'
miRNA:   3'- aUCGUCGCCu------UUCGCGG--------CCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 16762 0.68 0.723579
Target:  5'- cGGUAGCGaggucccGAucGuCGCCGGCGGUcucuGUGg -3'
miRNA:   3'- aUCGUCGC-------CUuuC-GCGGCCGCCA----UAC- -5'
24454 5' -57.5 NC_005264.1 + 97666 0.68 0.724568
Target:  5'- aGGCcGCGGccauggccagagAGGGCGCCGccGCGGUGUu -3'
miRNA:   3'- aUCGuCGCC------------UUUCGCGGC--CGCCAUAc -5'
24454 5' -57.5 NC_005264.1 + 120722 0.68 0.724568
Target:  5'- cGGUcgGGCGGAGgacGGUGCCGGCGa---- -3'
miRNA:   3'- aUCG--UCGCCUU---UCGCGGCCGCcauac -5'
24454 5' -57.5 NC_005264.1 + 60841 0.68 0.724568
Target:  5'- cGGUAGgGGAAAGCaGCuuCGGCGGa--- -3'
miRNA:   3'- aUCGUCgCCUUUCG-CG--GCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 153549 0.68 0.74417
Target:  5'- aAGCAggauGCGGuuGGGCGuuGGCGGg--- -3'
miRNA:   3'- aUCGU----CGCCu-UUCGCggCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 34522 0.68 0.74417
Target:  5'- aAGCAggauGCGGuuGGGCGuuGGCGGg--- -3'
miRNA:   3'- aUCGU----CGCCu-UUCGCggCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 52448 0.68 0.752867
Target:  5'- gAGCAGCGucagcauGCGCCcgccgucGGCGGUAUu -3'
miRNA:   3'- aUCGUCGCcuuu---CGCGG-------CCGCCAUAc -5'
24454 5' -57.5 NC_005264.1 + 103718 0.68 0.753828
Target:  5'- gAGCGGCGGcgcggcaucAGCGgCGGCGGc--- -3'
miRNA:   3'- aUCGUCGCCuu-------UCGCgGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 117846 0.68 0.753828
Target:  5'- -cGCGGCGGAGuGCGCaugcaaggcaUGGCGGa--- -3'
miRNA:   3'- auCGUCGCCUUuCGCG----------GCCGCCauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.