miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 5' -57.5 NC_005264.1 + 73038 1.05 0.003238
Target:  5'- cUAGCAGCGGAAAGCGCCGGCGGUAUGc -3'
miRNA:   3'- -AUCGUCGCCUUUCGCGGCCGCCAUAC- -5'
24454 5' -57.5 NC_005264.1 + 79419 0.78 0.215452
Target:  5'- -cGCGGCGGAAcccAGCGUgGGCGGUGc- -3'
miRNA:   3'- auCGUCGCCUU---UCGCGgCCGCCAUac -5'
24454 5' -57.5 NC_005264.1 + 150700 0.76 0.294224
Target:  5'- cAGCAaCGGgcAGCGCCGGCGGa--- -3'
miRNA:   3'- aUCGUcGCCuuUCGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 146751 0.76 0.308166
Target:  5'- gGGCGGCGGAcccggcaacagcAAGCGCCGcGCGGc--- -3'
miRNA:   3'- aUCGUCGCCU------------UUCGCGGC-CGCCauac -5'
24454 5' -57.5 NC_005264.1 + 120135 0.74 0.40222
Target:  5'- gAGCAGgaGGAcgGAGCGCCGGcCGGcgAUGa -3'
miRNA:   3'- aUCGUCg-CCU--UUCGCGGCC-GCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 162654 0.72 0.483684
Target:  5'- aGGCu-CGGAAGcGCGCCGGCGGg--- -3'
miRNA:   3'- aUCGucGCCUUU-CGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 36745 0.72 0.502861
Target:  5'- -cGCAGCGcGAcGGCGCCGGcCGGc--- -3'
miRNA:   3'- auCGUCGC-CUuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 155771 0.72 0.502861
Target:  5'- -cGCAGCGcGAcGGCGCCGGcCGGc--- -3'
miRNA:   3'- auCGUCGC-CUuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 56533 0.71 0.562176
Target:  5'- cGGCGGCacaGGugauGGUGCCGGCGGggaAUGu -3'
miRNA:   3'- aUCGUCG---CCuu--UCGCGGCCGCCa--UAC- -5'
24454 5' -57.5 NC_005264.1 + 120220 0.7 0.582399
Target:  5'- -cGCAGCGGAccGGGCGUCcGCGGccAUGg -3'
miRNA:   3'- auCGUCGCCU--UUCGCGGcCGCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 1193 0.7 0.582399
Target:  5'- -cGCAGCGGAccGGGCGUCcGCGGccAUGg -3'
miRNA:   3'- auCGUCGCCU--UUCGCGGcCGCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 30398 0.7 0.592568
Target:  5'- cGGCGGCGGucgcGCGCCGGUGcGg--- -3'
miRNA:   3'- aUCGUCGCCuuu-CGCGGCCGC-Cauac -5'
24454 5' -57.5 NC_005264.1 + 149425 0.7 0.592568
Target:  5'- cGGCGGCGGucgcGCGCCGGUGcGg--- -3'
miRNA:   3'- aUCGUCGCCuuu-CGCGGCCGC-Cauac -5'
24454 5' -57.5 NC_005264.1 + 75095 0.7 0.602765
Target:  5'- -cGCuGCGGcAGGCGCCGGCGc---- -3'
miRNA:   3'- auCGuCGCCuUUCGCGGCCGCcauac -5'
24454 5' -57.5 NC_005264.1 + 16562 0.7 0.602765
Target:  5'- -cGCGGUGGgcGGCGCCggGGCGGc--- -3'
miRNA:   3'- auCGUCGCCuuUCGCGG--CCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 156184 0.7 0.612985
Target:  5'- -uGCGGCGuGgcGGCGCCGGCuaUAUGu -3'
miRNA:   3'- auCGUCGC-CuuUCGCGGCCGccAUAC- -5'
24454 5' -57.5 NC_005264.1 + 90651 0.7 0.623218
Target:  5'- gGGCGcGCGGAGAccGCauuGCUGGCGGcUAUGa -3'
miRNA:   3'- aUCGU-CGCCUUU--CG---CGGCCGCC-AUAC- -5'
24454 5' -57.5 NC_005264.1 + 1978 0.7 0.623218
Target:  5'- uUGGUAGCGGugGGUacaGCCGGgGGUccAUGa -3'
miRNA:   3'- -AUCGUCGCCuuUCG---CGGCCgCCA--UAC- -5'
24454 5' -57.5 NC_005264.1 + 65568 0.69 0.652906
Target:  5'- aGGCAGCGGccacuaccgugccAAGGC-CCGGCGGc--- -3'
miRNA:   3'- aUCGUCGCC-------------UUUCGcGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 74297 0.69 0.653928
Target:  5'- uUAGCGGCGGucuGGCGCgCGGCa----- -3'
miRNA:   3'- -AUCGUCGCCuu-UCGCG-GCCGccauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.