miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 5' -57.5 NC_005264.1 + 25909 0.67 0.782122
Target:  5'- aGGCgaacagauGGCGGggGGCGCUGuaGCGGa--- -3'
miRNA:   3'- aUCG--------UCGCCuuUCGCGGC--CGCCauac -5'
24454 5' -57.5 NC_005264.1 + 37132 0.68 0.704647
Target:  5'- --aCAGgGGcaccAGGCGCCGGCGGUc-- -3'
miRNA:   3'- aucGUCgCCu---UUCGCGGCCGCCAuac -5'
24454 5' -57.5 NC_005264.1 + 126083 0.68 0.714642
Target:  5'- aAGCGGCGac-GGCGCCGGcCGGc--- -3'
miRNA:   3'- aUCGUCGCcuuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 149881 0.68 0.714642
Target:  5'- cGGCGGCGGc--GCGCCGccCGGUAg- -3'
miRNA:   3'- aUCGUCGCCuuuCGCGGCc-GCCAUac -5'
24454 5' -57.5 NC_005264.1 + 153549 0.68 0.74417
Target:  5'- aAGCAggauGCGGuuGGGCGuuGGCGGg--- -3'
miRNA:   3'- aUCGU----CGCCu-UUCGCggCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 52448 0.68 0.752867
Target:  5'- gAGCAGCGucagcauGCGCCcgccgucGGCGGUAUu -3'
miRNA:   3'- aUCGUCGCcuuu---CGCGG-------CCGCCAUAc -5'
24454 5' -57.5 NC_005264.1 + 96106 0.67 0.763379
Target:  5'- -uGCcGCGGuuuAGGCGCCGGCGc---- -3'
miRNA:   3'- auCGuCGCCu--UUCGCGGCCGCcauac -5'
24454 5' -57.5 NC_005264.1 + 150549 0.67 0.763379
Target:  5'- aGGCucgGGCGGGGAGgGCCGuuGGgGUGg -3'
miRNA:   3'- aUCG---UCGCCUUUCgCGGCcgCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 79220 0.67 0.772814
Target:  5'- aGGCuGCGuGcAGGCGgCGGCGGggGUGu -3'
miRNA:   3'- aUCGuCGC-CuUUCGCgGCCGCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 145922 0.69 0.684481
Target:  5'- cGGCGGCGGGucAGCGCgGGCauGGg--- -3'
miRNA:   3'- aUCGUCGCCUu-UCGCGgCCG--CCauac -5'
24454 5' -57.5 NC_005264.1 + 60269 0.69 0.674328
Target:  5'- gAGCuGCGGuGAGCGCCGcGuCGGgcAUGa -3'
miRNA:   3'- aUCGuCGCCuUUCGCGGC-C-GCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 80518 0.69 0.664141
Target:  5'- cAGCAGCuaacgauGAAuugcAGCGCCGGCGGc--- -3'
miRNA:   3'- aUCGUCGc------CUU----UCGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 162654 0.72 0.483684
Target:  5'- aGGCu-CGGAAGcGCGCCGGCGGg--- -3'
miRNA:   3'- aUCGucGCCUUU-CGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 155771 0.72 0.502861
Target:  5'- -cGCAGCGcGAcGGCGCCGGcCGGc--- -3'
miRNA:   3'- auCGUCGC-CUuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 120220 0.7 0.582399
Target:  5'- -cGCAGCGGAccGGGCGUCcGCGGccAUGg -3'
miRNA:   3'- auCGUCGCCU--UUCGCGGcCGCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 149425 0.7 0.592568
Target:  5'- cGGCGGCGGucgcGCGCCGGUGcGg--- -3'
miRNA:   3'- aUCGUCGCCuuu-CGCGGCCGC-Cauac -5'
24454 5' -57.5 NC_005264.1 + 16562 0.7 0.602765
Target:  5'- -cGCGGUGGgcGGCGCCggGGCGGc--- -3'
miRNA:   3'- auCGUCGCCuuUCGCGG--CCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 75095 0.7 0.602765
Target:  5'- -cGCuGCGGcAGGCGCCGGCGc---- -3'
miRNA:   3'- auCGuCGCCuUUCGCGGCCGCcauac -5'
24454 5' -57.5 NC_005264.1 + 1978 0.7 0.623218
Target:  5'- uUGGUAGCGGugGGUacaGCCGGgGGUccAUGa -3'
miRNA:   3'- -AUCGUCGCCuuUCG---CGGCCgCCA--UAC- -5'
24454 5' -57.5 NC_005264.1 + 65568 0.69 0.652906
Target:  5'- aGGCAGCGGccacuaccgugccAAGGC-CCGGCGGc--- -3'
miRNA:   3'- aUCGUCGCC-------------UUUCGcGGCCGCCauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.