Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24454 | 5' | -57.5 | NC_005264.1 | + | 155266 | 0.66 | 0.851021 |
Target: 5'- cAGCGGCGcGggGuaGgCGGCGGggacgAUGa -3' miRNA: 3'- aUCGUCGC-CuuUcgCgGCCGCCa----UAC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 120903 | 0.67 | 0.782122 |
Target: 5'- -cGCGGCGGAAAaacuaCGCCGaGCGGc--- -3' miRNA: 3'- auCGUCGCCUUUc----GCGGC-CGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 31522 | 0.67 | 0.763379 |
Target: 5'- aGGCucgGGCGGGGAGgGCCGuuGGgGUGg -3' miRNA: 3'- aUCG---UCGCCUUUCgCGGCcgCCaUAC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 73038 | 1.05 | 0.003238 |
Target: 5'- cUAGCAGCGGAAAGCGCCGGCGGUAUGc -3' miRNA: 3'- -AUCGUCGCCUUUCGCGGCCGCCAUAC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 5291 | 0.66 | 0.829839 |
Target: 5'- gGGCGGCGGcugacccguggggcGGGCGaCUGGCGGg--- -3' miRNA: 3'- aUCGUCGCCu-------------UUCGC-GGCCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 40809 | 0.66 | 0.826469 |
Target: 5'- gGGCGcUGGAugauuAGCGCCGGcCGGUc-- -3' miRNA: 3'- aUCGUcGCCUu----UCGCGGCC-GCCAuac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 149227 | 0.66 | 0.817921 |
Target: 5'- -cGcCAGCGGucacuGuCGCUGGCcGGUGUGg -3' miRNA: 3'- auC-GUCGCCuuu--C-GCGGCCG-CCAUAC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 69508 | 0.66 | 0.817921 |
Target: 5'- -cGCGGauugcgGGGGAGUGCCGG-GGUcgGa -3' miRNA: 3'- auCGUCg-----CCUUUCGCGGCCgCCAuaC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 35778 | 0.66 | 0.817057 |
Target: 5'- aAGaGGCGGAGGGCGCgguggcgccgucgUGGCGGg--- -3' miRNA: 3'- aUCgUCGCCUUUCGCG-------------GCCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 25614 | 0.67 | 0.791296 |
Target: 5'- cGGCGuuGCGGAAcaCGgCGGCGGUGg- -3' miRNA: 3'- aUCGU--CGCCUUucGCgGCCGCCAUac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 81812 | 0.66 | 0.809204 |
Target: 5'- gUAGaCGGCGGGuAGGCGCCGcUGGUu-- -3' miRNA: 3'- -AUC-GUCGCCU-UUCGCGGCcGCCAuac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 43214 | 0.66 | 0.817921 |
Target: 5'- gGGgGGgGGggGGCuaCGGCGGg--- -3' miRNA: 3'- aUCgUCgCCuuUCGcgGCCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 108713 | 0.66 | 0.851021 |
Target: 5'- cGGUGGUGGgcAGCGCCaacuccauuucaGGUGGcGUGa -3' miRNA: 3'- aUCGUCGCCuuUCGCGG------------CCGCCaUAC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 2896 | 0.66 | 0.809204 |
Target: 5'- -cGCGGCGGGGAGgGCgaCGGCGa---- -3' miRNA: 3'- auCGUCGCCUUUCgCG--GCCGCcauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 57136 | 0.66 | 0.842217 |
Target: 5'- gGGC-GCGGAcguaggcuggucuGucuuuGCGCCGGCGGg--- -3' miRNA: 3'- aUCGuCGCCU-------------Uu----CGCGGCCGCCauac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 43627 | 0.66 | 0.817921 |
Target: 5'- aGGCu-CGGAAGcGCGCCGGCgaggucguaGGUGUa -3' miRNA: 3'- aUCGucGCCUUU-CGCGGCCG---------CCAUAc -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 75414 | 0.67 | 0.791296 |
Target: 5'- cGGCcGCGGgcAGUGUaCGGCGGgccGUGa -3' miRNA: 3'- aUCGuCGCCuuUCGCG-GCCGCCa--UAC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 55361 | 0.67 | 0.772814 |
Target: 5'- uUGGCcauAGcCGGGccGCGUCGGCGGUc-- -3' miRNA: 3'- -AUCG---UC-GCCUuuCGCGGCCGCCAuac -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 136238 | 0.66 | 0.842217 |
Target: 5'- aUAGCAGCGGcuuuAGCGCagaauuuaacaauCGGaCGGaAUGa -3' miRNA: 3'- -AUCGUCGCCuu--UCGCG-------------GCC-GCCaUAC- -5' |
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24454 | 5' | -57.5 | NC_005264.1 | + | 6437 | 0.66 | 0.826469 |
Target: 5'- -cGCGGCGGcgu-CGCUGGCGGa--- -3' miRNA: 3'- auCGUCGCCuuucGCGGCCGCCauac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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