miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 5' -57.5 NC_005264.1 + 1193 0.7 0.582399
Target:  5'- -cGCAGCGGAccGGGCGUCcGCGGccAUGg -3'
miRNA:   3'- auCGUCGCCU--UUCGCGGcCGCCa-UAC- -5'
24454 5' -57.5 NC_005264.1 + 1978 0.7 0.623218
Target:  5'- uUGGUAGCGGugGGUacaGCCGGgGGUccAUGa -3'
miRNA:   3'- -AUCGUCGCCuuUCG---CGGCCgCCA--UAC- -5'
24454 5' -57.5 NC_005264.1 + 2896 0.66 0.809204
Target:  5'- -cGCGGCGGGGAGgGCgaCGGCGa---- -3'
miRNA:   3'- auCGUCGCCUUUCgCG--GCCGCcauac -5'
24454 5' -57.5 NC_005264.1 + 3610 0.67 0.791296
Target:  5'- gUGGUGGaCGGugGGCGCUgugGGCGGgGUGg -3'
miRNA:   3'- -AUCGUC-GCCuuUCGCGG---CCGCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 4180 0.66 0.83484
Target:  5'- gGGUAgGUGGggGGUGCa-GCGGUAUu -3'
miRNA:   3'- aUCGU-CGCCuuUCGCGgcCGCCAUAc -5'
24454 5' -57.5 NC_005264.1 + 5291 0.66 0.829839
Target:  5'- gGGCGGCGGcugacccguggggcGGGCGaCUGGCGGg--- -3'
miRNA:   3'- aUCGUCGCCu-------------UUCGC-GGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 6437 0.66 0.826469
Target:  5'- -cGCGGCGGcgu-CGCUGGCGGa--- -3'
miRNA:   3'- auCGUCGCCuuucGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 7056 0.68 0.714642
Target:  5'- aAGCGGCGac-GGCGCCGGcCGGc--- -3'
miRNA:   3'- aUCGUCGCcuuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 10077 0.67 0.782122
Target:  5'- -cGCGGCGGAAucuccCGCCGGgGGc--- -3'
miRNA:   3'- auCGUCGCCUUuc---GCGGCCgCCauac -5'
24454 5' -57.5 NC_005264.1 + 16562 0.7 0.602765
Target:  5'- -cGCGGUGGgcGGCGCCggGGCGGc--- -3'
miRNA:   3'- auCGUCGCCuuUCGCGG--CCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 16762 0.68 0.723579
Target:  5'- cGGUAGCGaggucccGAucGuCGCCGGCGGUcucuGUGg -3'
miRNA:   3'- aUCGUCGC-------CUuuC-GCGGCCGCCA----UAC- -5'
24454 5' -57.5 NC_005264.1 + 18014 0.68 0.713646
Target:  5'- cGGCGGCGGGucggccgcggucAGGUuaaccauGUCGGCGGUAg- -3'
miRNA:   3'- aUCGUCGCCU------------UUCG-------CGGCCGCCAUac -5'
24454 5' -57.5 NC_005264.1 + 21754 0.68 0.714642
Target:  5'- cGGCGGCGGccgucuuGAGCGCCguaacuuuGGCGGc--- -3'
miRNA:   3'- aUCGUCGCCu------UUCGCGG--------CCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 25614 0.67 0.791296
Target:  5'- cGGCGuuGCGGAAcaCGgCGGCGGUGg- -3'
miRNA:   3'- aUCGU--CGCCUUucGCgGCCGCCAUac -5'
24454 5' -57.5 NC_005264.1 + 25909 0.67 0.782122
Target:  5'- aGGCgaacagauGGCGGggGGCGCUGuaGCGGa--- -3'
miRNA:   3'- aUCG--------UCGCCuuUCGCGGC--CGCCauac -5'
24454 5' -57.5 NC_005264.1 + 30398 0.7 0.592568
Target:  5'- cGGCGGCGGucgcGCGCCGGUGcGg--- -3'
miRNA:   3'- aUCGUCGCCuuu-CGCGGCCGC-Cauac -5'
24454 5' -57.5 NC_005264.1 + 30855 0.68 0.714642
Target:  5'- cGGCGGCGGc--GCGCCGccCGGUAg- -3'
miRNA:   3'- aUCGUCGCCuuuCGCGGCc-GCCAUac -5'
24454 5' -57.5 NC_005264.1 + 31522 0.67 0.763379
Target:  5'- aGGCucgGGCGGGGAGgGCCGuuGGgGUGg -3'
miRNA:   3'- aUCG---UCGCCUUUCgCGGCcgCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 34522 0.68 0.74417
Target:  5'- aAGCAggauGCGGuuGGGCGuuGGCGGg--- -3'
miRNA:   3'- aUCGU----CGCCu-UUCGCggCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 35778 0.66 0.817057
Target:  5'- aAGaGGCGGAGGGCGCgguggcgccgucgUGGCGGg--- -3'
miRNA:   3'- aUCgUCGCCUUUCGCG-------------GCCGCCauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.