miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24454 5' -57.5 NC_005264.1 + 162654 0.72 0.483684
Target:  5'- aGGCu-CGGAAGcGCGCCGGCGGg--- -3'
miRNA:   3'- aUCGucGCCUUU-CGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 162241 0.66 0.817921
Target:  5'- gGGgGGgGGggGGCuaCGGCGGg--- -3'
miRNA:   3'- aUCgUCgCCuuUCGcgGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 159835 0.66 0.826469
Target:  5'- gGGCGcUGGAugauuAGCGCCGGcCGGUc-- -3'
miRNA:   3'- aUCGUcGCCUu----UCGCGGCC-GCCAuac -5'
24454 5' -57.5 NC_005264.1 + 156184 0.7 0.612985
Target:  5'- -uGCGGCGuGgcGGCGCCGGCuaUAUGu -3'
miRNA:   3'- auCGUCGC-CuuUCGCGGCCGccAUAC- -5'
24454 5' -57.5 NC_005264.1 + 155771 0.72 0.502861
Target:  5'- -cGCAGCGcGAcGGCGCCGGcCGGc--- -3'
miRNA:   3'- auCGUCGC-CUuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 155266 0.66 0.851021
Target:  5'- cAGCGGCGcGggGuaGgCGGCGGggacgAUGa -3'
miRNA:   3'- aUCGUCGC-CuuUcgCgGCCGCCa----UAC- -5'
24454 5' -57.5 NC_005264.1 + 154804 0.66 0.817057
Target:  5'- aAGaGGCGGAGGGCGCgguggcgccgucgUGGCGGg--- -3'
miRNA:   3'- aUCgUCGCCUUUCGCG-------------GCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 153549 0.68 0.74417
Target:  5'- aAGCAggauGCGGuuGGGCGuuGGCGGg--- -3'
miRNA:   3'- aUCGU----CGCCu-UUCGCggCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 150700 0.76 0.294224
Target:  5'- cAGCAaCGGgcAGCGCCGGCGGa--- -3'
miRNA:   3'- aUCGUcGCCuuUCGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 150549 0.67 0.763379
Target:  5'- aGGCucgGGCGGGGAGgGCCGuuGGgGUGg -3'
miRNA:   3'- aUCG---UCGCCUUUCgCGGCcgCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 149881 0.68 0.714642
Target:  5'- cGGCGGCGGc--GCGCCGccCGGUAg- -3'
miRNA:   3'- aUCGUCGCCuuuCGCGGCc-GCCAUac -5'
24454 5' -57.5 NC_005264.1 + 149425 0.7 0.592568
Target:  5'- cGGCGGCGGucgcGCGCCGGUGcGg--- -3'
miRNA:   3'- aUCGUCGCCuuu-CGCGGCCGC-Cauac -5'
24454 5' -57.5 NC_005264.1 + 149227 0.66 0.817921
Target:  5'- -cGcCAGCGGucacuGuCGCUGGCcGGUGUGg -3'
miRNA:   3'- auC-GUCGCCuuu--C-GCGGCCG-CCAUAC- -5'
24454 5' -57.5 NC_005264.1 + 146751 0.76 0.308166
Target:  5'- gGGCGGCGGAcccggcaacagcAAGCGCCGcGCGGc--- -3'
miRNA:   3'- aUCGUCGCCU------------UUCGCGGC-CGCCauac -5'
24454 5' -57.5 NC_005264.1 + 145922 0.69 0.684481
Target:  5'- cGGCGGCGGGucAGCGCgGGCauGGg--- -3'
miRNA:   3'- aUCGUCGCCUu-UCGCGgCCG--CCauac -5'
24454 5' -57.5 NC_005264.1 + 136238 0.66 0.842217
Target:  5'- aUAGCAGCGGcuuuAGCGCagaauuuaacaauCGGaCGGaAUGa -3'
miRNA:   3'- -AUCGUCGCCuu--UCGCG-------------GCC-GCCaUAC- -5'
24454 5' -57.5 NC_005264.1 + 133944 0.68 0.753828
Target:  5'- -uGCGGUGGGAAGCuugGCCGgggucuucGCGGUGg- -3'
miRNA:   3'- auCGUCGCCUUUCG---CGGC--------CGCCAUac -5'
24454 5' -57.5 NC_005264.1 + 126083 0.68 0.714642
Target:  5'- aAGCGGCGac-GGCGCCGGcCGGc--- -3'
miRNA:   3'- aUCGUCGCcuuUCGCGGCC-GCCauac -5'
24454 5' -57.5 NC_005264.1 + 125464 0.66 0.826469
Target:  5'- -cGCGGCGGcgu-CGCUGGCGGa--- -3'
miRNA:   3'- auCGUCGCCuuucGCGGCCGCCauac -5'
24454 5' -57.5 NC_005264.1 + 124318 0.66 0.829839
Target:  5'- gGGCGGCGGcugacccguggggcGGGCGaCUGGCGGg--- -3'
miRNA:   3'- aUCGUCGCCu-------------UUCGC-GGCCGCCauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.