miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24456 3' -50.9 NC_005264.1 + 96328 0.68 0.981467
Target:  5'- ---gCGCGAaaGCGAGCuCGUCGAGCGc -3'
miRNA:   3'- auugGUGCUa-CGCUUGcGCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 11087 0.68 0.981467
Target:  5'- gUAAUUACGAUGCu-GCGgCGUCGAGa- -3'
miRNA:   3'- -AUUGGUGCUACGcuUGC-GCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 68063 0.68 0.981254
Target:  5'- aGGCgGCGAgaucggggaacuuUGCGAuCGCGUCGAu-- -3'
miRNA:   3'- aUUGgUGCU-------------ACGCUuGCGCAGCUugu -5'
24456 3' -50.9 NC_005264.1 + 103501 0.68 0.979021
Target:  5'- cUGAuCCGCGAcagGCuguucauguacauGGACGUGUCGAGCGc -3'
miRNA:   3'- -AUU-GGUGCUa--CG-------------CUUGCGCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 103079 0.68 0.976849
Target:  5'- --cCCGCGAaGCGucCGCGUCGcAGCc -3'
miRNA:   3'- auuGGUGCUaCGCuuGCGCAGC-UUGu -5'
24456 3' -50.9 NC_005264.1 + 48577 0.68 0.976849
Target:  5'- -uGCCACGAcGCGcuuCGCGgUGGACAa -3'
miRNA:   3'- auUGGUGCUaCGCuu-GCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 5684 0.68 0.974247
Target:  5'- --cCCACGAguacaGAGCGCG-CGGGCAa -3'
miRNA:   3'- auuGGUGCUacg--CUUGCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 115310 0.68 0.974247
Target:  5'- -uACCGCgGAUGCcucGAuacucucCGCGUCGGGCAa -3'
miRNA:   3'- auUGGUG-CUACG---CUu------GCGCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 109266 0.68 0.974247
Target:  5'- -cGCCACGcguCGGGCGCGUCGuaccGCGa -3'
miRNA:   3'- auUGGUGCuacGCUUGCGCAGCu---UGU- -5'
24456 3' -50.9 NC_005264.1 + 124711 0.68 0.974247
Target:  5'- --cCCACGAguacaGAGCGCG-CGGGCAa -3'
miRNA:   3'- auuGGUGCUacg--CUUGCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 146509 0.68 0.971438
Target:  5'- gGGCCGCGcgGUuccaGAgcuACGCGUCGAGa- -3'
miRNA:   3'- aUUGGUGCuaCG----CU---UGCGCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 153294 0.68 0.971438
Target:  5'- gAGgCGCGG-GCG-ACGCGUCGAAgAg -3'
miRNA:   3'- aUUgGUGCUaCGCuUGCGCAGCUUgU- -5'
24456 3' -50.9 NC_005264.1 + 34267 0.68 0.971438
Target:  5'- gAGgCGCGG-GCG-ACGCGUCGAAgAg -3'
miRNA:   3'- aUUgGUGCUaCGCuUGCGCAGCUUgU- -5'
24456 3' -50.9 NC_005264.1 + 92194 0.68 0.971145
Target:  5'- cGGCCACGGUGUuguuGAcgcgccuGCGCG-CGAACu -3'
miRNA:   3'- aUUGGUGCUACG----CU-------UGCGCaGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 120788 0.69 0.96965
Target:  5'- -cGCCGCGGgcaacGCGAuuggauaggccgcguGCGCGUCG-ACAc -3'
miRNA:   3'- auUGGUGCUa----CGCU---------------UGCGCAGCuUGU- -5'
24456 3' -50.9 NC_005264.1 + 95459 0.69 0.968415
Target:  5'- -uACCGCGccgGCGGGCGCaG-CGAGCGc -3'
miRNA:   3'- auUGGUGCua-CGCUUGCG-CaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 75157 0.69 0.965172
Target:  5'- gGGCCACGccagaguuGUGCaGuAGCGCGUUGAAUg -3'
miRNA:   3'- aUUGGUGC--------UACG-C-UUGCGCAGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 17140 0.69 0.965172
Target:  5'- aGGCUugGgcGCGcAUGgGUCGGACAa -3'
miRNA:   3'- aUUGGugCuaCGCuUGCgCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 91897 0.69 0.965172
Target:  5'- uUGGCCGCGGcagcgauggGCGGGCGCGgCGAcCAu -3'
miRNA:   3'- -AUUGGUGCUa--------CGCUUGCGCaGCUuGU- -5'
24456 3' -50.9 NC_005264.1 + 66538 0.69 0.965172
Target:  5'- cGACCGCGuUGCGGGCGuCGgCGAuuuccACAa -3'
miRNA:   3'- aUUGGUGCuACGCUUGC-GCaGCU-----UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.