miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24456 3' -50.9 NC_005264.1 + 94229 0.66 0.993379
Target:  5'- -uGCUACGAUGCGcuACGCGgccacaCGAAa- -3'
miRNA:   3'- auUGGUGCUACGCu-UGCGCa-----GCUUgu -5'
24456 3' -50.9 NC_005264.1 + 113039 0.66 0.993379
Target:  5'- cGGCCGCGAcugggccgcgGCGAucuuACGCGagaCGGACAu -3'
miRNA:   3'- aUUGGUGCUa---------CGCU----UGCGCa--GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 6323 0.66 0.993283
Target:  5'- gAGCCGCGAgcccccguagcugUGCGAuACGCG--GGACAg -3'
miRNA:   3'- aUUGGUGCU-------------ACGCU-UGCGCagCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 125350 0.66 0.993283
Target:  5'- gAGCCGCGAgcccccguagcugUGCGAuACGCG--GGACAg -3'
miRNA:   3'- aUUGGUGCU-------------ACGCU-UGCGCagCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 28461 0.66 0.992043
Target:  5'- cGACgACGGacacuggcuaaaucUGCGAugGCGCGaCGAACGu -3'
miRNA:   3'- aUUGgUGCU--------------ACGCU--UGCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 114848 0.66 0.99124
Target:  5'- --uCCACGGUGCGAu--CGUCGAc-- -3'
miRNA:   3'- auuGGUGCUACGCUugcGCAGCUugu -5'
24456 3' -50.9 NC_005264.1 + 95981 0.66 0.99124
Target:  5'- --uCCGCGc-GCGAucuauuuuCGCGUCGGGCGa -3'
miRNA:   3'- auuGGUGCuaCGCUu-------GCGCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 4343 0.67 0.989984
Target:  5'- --cCCugGcgGCuGAgcGCGCGUCGcAGCAu -3'
miRNA:   3'- auuGGugCuaCG-CU--UGCGCAGC-UUGU- -5'
24456 3' -50.9 NC_005264.1 + 73933 0.67 0.989984
Target:  5'- --uCCACGc-GCGAugGCGUCauGAACu -3'
miRNA:   3'- auuGGUGCuaCGCUugCGCAG--CUUGu -5'
24456 3' -50.9 NC_005264.1 + 123370 0.67 0.989984
Target:  5'- --cCCugGcgGCuGAgcGCGCGUCGcAGCAu -3'
miRNA:   3'- auuGGugCuaCG-CU--UGCGCAGC-UUGU- -5'
24456 3' -50.9 NC_005264.1 + 37572 0.67 0.989984
Target:  5'- -cGCCGCGGaggGCGAAgaacaaguCGCGcCGAGCu -3'
miRNA:   3'- auUGGUGCUa--CGCUU--------GCGCaGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 22708 0.67 0.98859
Target:  5'- aUAGCCACGAgUGCG-GCGCG-CaAGCGu -3'
miRNA:   3'- -AUUGGUGCU-ACGCuUGCGCaGcUUGU- -5'
24456 3' -50.9 NC_005264.1 + 40714 0.67 0.98859
Target:  5'- --uUCuCGAauaucGCGGACGUGUCGAACGc -3'
miRNA:   3'- auuGGuGCUa----CGCUUGCGCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 153135 0.67 0.987051
Target:  5'- aUGGCUcaGCGgcGCGAAacaGCGUCGAGg- -3'
miRNA:   3'- -AUUGG--UGCuaCGCUUg--CGCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 142842 0.67 0.987051
Target:  5'- cAACCggauGCGA-GCGAGCGCgGUCGGu-- -3'
miRNA:   3'- aUUGG----UGCUaCGCUUGCG-CAGCUugu -5'
24456 3' -50.9 NC_005264.1 + 34108 0.67 0.987051
Target:  5'- aUGGCUcaGCGgcGCGAAacaGCGUCGAGg- -3'
miRNA:   3'- -AUUGG--UGCuaCGCUUg--CGCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 66266 0.67 0.985357
Target:  5'- gGGCCA-GAUcGCGcucUGCGUCGGACAu -3'
miRNA:   3'- aUUGGUgCUA-CGCuu-GCGCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 20057 0.67 0.985357
Target:  5'- -cGCCACGcgGCcc-CGCGUagCGAGCAa -3'
miRNA:   3'- auUGGUGCuaCGcuuGCGCA--GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 123878 0.67 0.985357
Target:  5'- ---aUACGAcaaGUGAACGCGUCGGAg- -3'
miRNA:   3'- auugGUGCUa--CGCUUGCGCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 120896 0.67 0.983303
Target:  5'- uUGACCACGcgGCGGaaaaacuACGC--CGAGCGg -3'
miRNA:   3'- -AUUGGUGCuaCGCU-------UGCGcaGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.