miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24456 3' -50.9 NC_005264.1 + 45153 0.72 0.880111
Target:  5'- -cGCCACGAcGCGGaggcaggagaGCGCGgcagCGAACGg -3'
miRNA:   3'- auUGGUGCUaCGCU----------UGCGCa---GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 114144 0.72 0.880111
Target:  5'- --cCCGCGA-GCGAcCGCGaCGAGCAg -3'
miRNA:   3'- auuGGUGCUaCGCUuGCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 76344 0.72 0.880111
Target:  5'- uUGGCCGCGcgGCGAcugcgcgcagGCGCGUUGGu-- -3'
miRNA:   3'- -AUUGGUGCuaCGCU----------UGCGCAGCUugu -5'
24456 3' -50.9 NC_005264.1 + 16451 0.72 0.880111
Target:  5'- --cCCGCgGGUGUGAACGUgGUCGAACc -3'
miRNA:   3'- auuGGUG-CUACGCUUGCG-CAGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 18442 0.71 0.900928
Target:  5'- ---aCACGAacuuaaUGCgGAACGCGUCGGGCc -3'
miRNA:   3'- auugGUGCU------ACG-CUUGCGCAGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 101355 0.7 0.930652
Target:  5'- aGACCGCGggGCGcgucGGCGCGcuaGAACGa -3'
miRNA:   3'- aUUGGUGCuaCGC----UUGCGCag-CUUGU- -5'
24456 3' -50.9 NC_005264.1 + 12981 0.7 0.935836
Target:  5'- cGACgACGAcGCGAGCcCGuUCGAGCAc -3'
miRNA:   3'- aUUGgUGCUaCGCUUGcGC-AGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 132008 0.7 0.935836
Target:  5'- cGACgACGAcGCGAGCcCGuUCGAGCAc -3'
miRNA:   3'- aUUGgUGCUaCGCUUGcGC-AGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 90994 0.7 0.940767
Target:  5'- -cACCGcCGccGCGAACGCGUCGuuauucGCGa -3'
miRNA:   3'- auUGGU-GCuaCGCUUGCGCAGCu-----UGU- -5'
24456 3' -50.9 NC_005264.1 + 18062 0.7 0.945446
Target:  5'- -cGCCGCGAgccaGGGCGCG-CGGGCAu -3'
miRNA:   3'- auUGGUGCUacg-CUUGCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 85058 0.7 0.945446
Target:  5'- -cGCCGCGGUGCGucucugcggcCGCGUCGu-CAg -3'
miRNA:   3'- auUGGUGCUACGCuu--------GCGCAGCuuGU- -5'
24456 3' -50.9 NC_005264.1 + 135551 0.7 0.949875
Target:  5'- gGACCGCGAUGacuuucgaGAagccGCGCGUCGcucGCGa -3'
miRNA:   3'- aUUGGUGCUACg-------CU----UGCGCAGCu--UGU- -5'
24456 3' -50.9 NC_005264.1 + 94408 0.69 0.954058
Target:  5'- aGACCGCGgcGCGGacuGCGCGaUCGcuGACGu -3'
miRNA:   3'- aUUGGUGCuaCGCU---UGCGC-AGC--UUGU- -5'
24456 3' -50.9 NC_005264.1 + 74388 0.69 0.957999
Target:  5'- --cCCugGGUaGCGG--GCGUCGAACAg -3'
miRNA:   3'- auuGGugCUA-CGCUugCGCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 3536 0.69 0.957999
Target:  5'- gAACCGCGAcGCGGcgGCGUCcAGCAu -3'
miRNA:   3'- aUUGGUGCUaCGCUugCGCAGcUUGU- -5'
24456 3' -50.9 NC_005264.1 + 122563 0.69 0.957999
Target:  5'- gAACCGCGAcGCGGcgGCGUCcAGCAu -3'
miRNA:   3'- aUUGGUGCUaCGCUugCGCAGcUUGU- -5'
24456 3' -50.9 NC_005264.1 + 77273 0.69 0.961702
Target:  5'- gGugCACGGUGCc-GCGC-UCGAACGa -3'
miRNA:   3'- aUugGUGCUACGcuUGCGcAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 75157 0.69 0.965172
Target:  5'- gGGCCACGccagaguuGUGCaGuAGCGCGUUGAAUg -3'
miRNA:   3'- aUUGGUGC--------UACG-C-UUGCGCAGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 17140 0.69 0.965172
Target:  5'- aGGCUugGgcGCGcAUGgGUCGGACAa -3'
miRNA:   3'- aUUGGugCuaCGCuUGCgCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 91897 0.69 0.965172
Target:  5'- uUGGCCGCGGcagcgauggGCGGGCGCGgCGAcCAu -3'
miRNA:   3'- -AUUGGUGCUa--------CGCUUGCGCaGCUuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.