miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24456 3' -50.9 NC_005264.1 + 72424 1.07 0.012386
Target:  5'- uUAACCACGAUGCGAACGCGUCGAACAc -3'
miRNA:   3'- -AUUGGUGCUACGCUUGCGCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 35826 0.8 0.480041
Target:  5'- cAACCACGAUGCGAGuugcCGCGU-GGGCAg -3'
miRNA:   3'- aUUGGUGCUACGCUU----GCGCAgCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 27927 0.76 0.676384
Target:  5'- cGACCGCGGUguugGCGuucuGCGCGUCGGugGu -3'
miRNA:   3'- aUUGGUGCUA----CGCu---UGCGCAGCUugU- -5'
24456 3' -50.9 NC_005264.1 + 85648 0.76 0.7076
Target:  5'- aUGGCCGCGAUggcccGCGAGCGCGacaUGAACGu -3'
miRNA:   3'- -AUUGGUGCUA-----CGCUUGCGCa--GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 118576 0.75 0.728087
Target:  5'- --uCCGCGcgGCGuGACGCGcCGAACAg -3'
miRNA:   3'- auuGGUGCuaCGC-UUGCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 59976 0.75 0.738203
Target:  5'- cAGCCACGcgGCGGugGCcG-CGAGCGa -3'
miRNA:   3'- aUUGGUGCuaCGCUugCG-CaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 77999 0.75 0.738203
Target:  5'- aGGCCGCGAUcGCGGGCGaucaCGUCGAuGCAa -3'
miRNA:   3'- aUUGGUGCUA-CGCUUGC----GCAGCU-UGU- -5'
24456 3' -50.9 NC_005264.1 + 122647 0.74 0.777584
Target:  5'- gGGCCGCGAggGCGGGCGCG-CuGACAu -3'
miRNA:   3'- aUUGGUGCUa-CGCUUGCGCaGcUUGU- -5'
24456 3' -50.9 NC_005264.1 + 153812 0.74 0.777584
Target:  5'- aAGCCA-GgcGCGAACGCGUCGGGa- -3'
miRNA:   3'- aUUGGUgCuaCGCUUGCGCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 3620 0.74 0.777584
Target:  5'- gGGCCGCGAggGCGGGCGCG-CuGACAu -3'
miRNA:   3'- aUUGGUGCUa-CGCUUGCGCaGcUUGU- -5'
24456 3' -50.9 NC_005264.1 + 80519 0.74 0.787108
Target:  5'- -cGCCGCGGUGCGcAACGuCGUCGcccccaAACAg -3'
miRNA:   3'- auUGGUGCUACGC-UUGC-GCAGC------UUGU- -5'
24456 3' -50.9 NC_005264.1 + 28869 0.74 0.796484
Target:  5'- gGACCGCGcgGCGAACGCcaccgCGAAg- -3'
miRNA:   3'- aUUGGUGCuaCGCUUGCGca---GCUUgu -5'
24456 3' -50.9 NC_005264.1 + 87056 0.73 0.849102
Target:  5'- cGACCugGAgGCGAGCGCGaacgaGAACc -3'
miRNA:   3'- aUUGGugCUaCGCUUGCGCag---CUUGu -5'
24456 3' -50.9 NC_005264.1 + 17965 0.73 0.849102
Target:  5'- cGACCACGAguccgaugGCGAGCGCGUUc---- -3'
miRNA:   3'- aUUGGUGCUa-------CGCUUGCGCAGcuugu -5'
24456 3' -50.9 NC_005264.1 + 133076 0.73 0.849102
Target:  5'- gAGCCGCGA-GCGAGCuGUGgugCGAGCu -3'
miRNA:   3'- aUUGGUGCUaCGCUUG-CGCa--GCUUGu -5'
24456 3' -50.9 NC_005264.1 + 3480 0.73 0.849102
Target:  5'- --uCCACGAUGUGGcACGCGUCGu--- -3'
miRNA:   3'- auuGGUGCUACGCU-UGCGCAGCuugu -5'
24456 3' -50.9 NC_005264.1 + 83250 0.73 0.857186
Target:  5'- -cGCCGCuGAUGCGcuGGCGCGgCGAACu -3'
miRNA:   3'- auUGGUG-CUACGC--UUGCGCaGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 123925 0.72 0.865053
Target:  5'- gGACCGCGGagGCGAGCGaCGaagaugCGAACGa -3'
miRNA:   3'- aUUGGUGCUa-CGCUUGC-GCa-----GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 4899 0.72 0.865053
Target:  5'- gGACCGCGGagGCGAGCGaCGaagaugCGAACGa -3'
miRNA:   3'- aUUGGUGCUa-CGCUUGC-GCa-----GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 60269 0.72 0.872697
Target:  5'- gAGCUGCGGUgaGCGc-CGCGUCGGGCAu -3'
miRNA:   3'- aUUGGUGCUA--CGCuuGCGCAGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.