miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24456 3' -50.9 NC_005264.1 + 3480 0.73 0.849102
Target:  5'- --uCCACGAUGUGGcACGCGUCGu--- -3'
miRNA:   3'- auuGGUGCUACGCU-UGCGCAGCuugu -5'
24456 3' -50.9 NC_005264.1 + 3536 0.69 0.957999
Target:  5'- gAACCGCGAcGCGGcgGCGUCcAGCAu -3'
miRNA:   3'- aUUGGUGCUaCGCUugCGCAGcUUGU- -5'
24456 3' -50.9 NC_005264.1 + 3620 0.74 0.777584
Target:  5'- gGGCCGCGAggGCGGGCGCG-CuGACAu -3'
miRNA:   3'- aUUGGUGCUa-CGCUUGCGCaGcUUGU- -5'
24456 3' -50.9 NC_005264.1 + 4343 0.67 0.989984
Target:  5'- --cCCugGcgGCuGAgcGCGCGUCGcAGCAu -3'
miRNA:   3'- auuGGugCuaCG-CU--UGCGCAGC-UUGU- -5'
24456 3' -50.9 NC_005264.1 + 4899 0.72 0.865053
Target:  5'- gGACCGCGGagGCGAGCGaCGaagaugCGAACGa -3'
miRNA:   3'- aUUGGUGCUa-CGCUUGC-GCa-----GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 5261 0.66 0.995783
Target:  5'- -cGCCGgGAgGCGAGuCGCGgcCGGACGg -3'
miRNA:   3'- auUGGUgCUaCGCUU-GCGCa-GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 5684 0.68 0.974247
Target:  5'- --cCCACGAguacaGAGCGCG-CGGGCAa -3'
miRNA:   3'- auuGGUGCUacg--CUUGCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 6323 0.66 0.993283
Target:  5'- gAGCCGCGAgcccccguagcugUGCGAuACGCG--GGACAg -3'
miRNA:   3'- aUUGGUGCU-------------ACGCU-UGCGCagCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 8062 0.66 0.995783
Target:  5'- --cCCACGucGCGGcCGCaGUCGGGCAc -3'
miRNA:   3'- auuGGUGCuaCGCUuGCG-CAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 11087 0.68 0.981467
Target:  5'- gUAAUUACGAUGCu-GCGgCGUCGAGa- -3'
miRNA:   3'- -AUUGGUGCUACGcuUGC-GCAGCUUgu -5'
24456 3' -50.9 NC_005264.1 + 12981 0.7 0.935836
Target:  5'- cGACgACGAcGCGAGCcCGuUCGAGCAc -3'
miRNA:   3'- aUUGgUGCUaCGCUUGcGC-AGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 13874 0.66 0.995077
Target:  5'- --cCCACGAccUGCucuACGCGUCGucgccuGCAg -3'
miRNA:   3'- auuGGUGCU--ACGcu-UGCGCAGCu-----UGU- -5'
24456 3' -50.9 NC_005264.1 + 14530 0.66 0.995077
Target:  5'- gGGCCACGcgaugacucUGCGAA-GCGUgGAGCu -3'
miRNA:   3'- aUUGGUGCu--------ACGCUUgCGCAgCUUGu -5'
24456 3' -50.9 NC_005264.1 + 16451 0.72 0.880111
Target:  5'- --cCCGCgGGUGUGAACGUgGUCGAACc -3'
miRNA:   3'- auuGGUG-CUACGCUUGCG-CAGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 17140 0.69 0.965172
Target:  5'- aGGCUugGgcGCGcAUGgGUCGGACAa -3'
miRNA:   3'- aUUGGugCuaCGCuUGCgCAGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 17965 0.73 0.849102
Target:  5'- cGACCACGAguccgaugGCGAGCGCGUUc---- -3'
miRNA:   3'- aUUGGUGCUa-------CGCUUGCGCAGcuugu -5'
24456 3' -50.9 NC_005264.1 + 18062 0.7 0.945446
Target:  5'- -cGCCGCGAgccaGGGCGCG-CGGGCAu -3'
miRNA:   3'- auUGGUGCUacg-CUUGCGCaGCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 18442 0.71 0.900928
Target:  5'- ---aCACGAacuuaaUGCgGAACGCGUCGGGCc -3'
miRNA:   3'- auugGUGCU------ACG-CUUGCGCAGCUUGu -5'
24456 3' -50.9 NC_005264.1 + 20057 0.67 0.985357
Target:  5'- -cGCCACGcgGCcc-CGCGUagCGAGCAa -3'
miRNA:   3'- auUGGUGCuaCGcuuGCGCA--GCUUGU- -5'
24456 3' -50.9 NC_005264.1 + 22708 0.67 0.98859
Target:  5'- aUAGCCACGAgUGCG-GCGCG-CaAGCGu -3'
miRNA:   3'- -AUUGGUGCU-ACGCuUGCGCaGcUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.